Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060737.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)                  62   3e-10
SB_48507| Best HMM Match : TolA (HMM E-Value=1)                        30   2.0  
SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)          28   8.1  

>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
          Length = 255

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = +2

Query: 356 LPTVFKWEGGGKQVFISGTFTDWET-IPMVKSHGDFVTIIDLPEGEHQYKYFLMENGGMI 532
           +PTV +WE GG++V +SG+F DW+T IPM  S+ +F  II+LPE      +         
Sbjct: 69  IPTVIRWENGGRKVLLSGSFNDWKTRIPMNYSNNEFTAIIELPEPTTNDNF--------- 119

Query: 533 LQ*K*LTMGMGSKNNLVTVKMSDFEVXQALAKDSEGIHSSAPD*IFTGNPP 685
                     G +NN+++V+ +D +V  AL  D+    +S      +G+PP
Sbjct: 120 ----------GGRNNVISVRKTDMDVFDALDTDANLSINSGSIKSVSGSPP 160


>SB_48507| Best HMM Match : TolA (HMM E-Value=1)
          Length = 649

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 254 YTKAVPESDIEYTEQRERSNTLTDGSKIVD 343
           Y K V E DI+  +  +RS+   DG KIVD
Sbjct: 292 YQKEVAEDDIDDMKAEKRSDVEEDGKKIVD 321


>SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -2

Query: 459 KSP-CDFTMGIVSQSVNVPEINTCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRCSVYS 283
           KSP CD   G+  Q V +  +        H +  G   + ST ++ + +    ++  + +
Sbjct: 405 KSPFCDSFYGLTDQLVALQLVMAKI----HKQEEGTFEVDSTRVISTHQEVIKTKLGIPT 460

Query: 282 ISLSGTALVYKERHLLYYCHHLDYFD 205
           + +  T ++      L YCH LDY D
Sbjct: 461 MGIVPTQILTNYNQFLAYCHALDYAD 486


>SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)
          Length = 463

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 266 VPESDIEYTEQRER-SNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWETIPMV 442
           VPE  I + +  +  S+TLT+      D++ L       G  +  F    + DW ++ M 
Sbjct: 68  VPEQSIVFLKTHKTGSSTLTNIFNRFADLRELKVALPLPGYNR--FKWPLYFDWSSVDMY 125

Query: 443 KSHGDFVTII 472
           + +GD+  ++
Sbjct: 126 RLNGDYANVL 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,630
Number of Sequences: 59808
Number of extensions: 452660
Number of successful extensions: 1943
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)