Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060737.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-1|CAB04480.1| 269|Caenorhabditis elegans Hypothetical pr... 75 6e-14
AL117202-12|CAB55074.1| 274|Caenorhabditis elegans Hypothetical... 62 4e-10
AC024765-1|AAF60529.2| 300|Caenorhabditis elegans Prion-like-(q... 33 0.19
U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class c... 29 2.3
U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class c... 29 2.3
U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class c... 29 2.3
AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein. 29 2.3
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 29 3.1
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81550-1|CAB04480.1| 269|Caenorhabditis elegans Hypothetical
protein F55F3.1 protein.
Length = 269
Score = 74.5 bits (175), Expect = 6e-14
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Frame = +2
Query: 341 DDIKVLPTVFKWEGGG---KQVFISGTFTDWET-IPMVKSHGDFVTIIDLPEGEHQYKYF 508
DD P VFKW +QV+I G++ W T IP+VKS DF TI+DL G+H+YK F
Sbjct: 52 DDKSKFPVVFKWNINNATPRQVYICGSWDGWNTKIPLVKSTSDFSTIVDLEPGKHEYK-F 110
Query: 509 LMENGGMILQ*K*LT-MGMGSKNNLVTVKMSDFEVXQALAKD 631
++++ ++ + T +G +NN+V + +DFEV AL KD
Sbjct: 111 MVDSKWVVDDNQQKTGNNLGGENNVVMIDEADFEVFDALDKD 152
>AL117202-12|CAB55074.1| 274|Caenorhabditis elegans Hypothetical
protein Y47D3A.15 protein.
Length = 274
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Frame = +2
Query: 359 PTVFKWE----GGGKQVFISGTFTDWET-IPMVKSHGDFVTIIDLPEGEHQYKYFLMENG 523
P VF+W + V I G++ +W+T IPMVKS DF TIIDL G+++YK F ++
Sbjct: 62 PVVFRWSFTQNAQPRVVHIVGSWDNWQTRIPMVKSTNDFSTIIDLQPGQYEYK-FQVDGS 120
Query: 524 GMILQ*K*LTMGM-GSKNNLVTVKMSDFEVXQALAKD 631
++ + + G++NN++ ++ SDF V +AL +D
Sbjct: 121 WVVDDNQGKAQDVHGNENNMINIQDSDFAVFEALDED 157
>AC024765-1|AAF60529.2| 300|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 82
protein.
Length = 300
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 239 RWRSLYTKAVPESDIEYTEQRERSNTLTDGSKIVDDIK 352
RW S+ + PE+ +E EQ+++ TDG + D +K
Sbjct: 241 RWNSVEQEPEPEAPLEAVEQQQQKQPTTDGQHLPDIVK 278
>U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform c protein.
Length = 667
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 43 LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMIEVVEM 222
L TY L K G G +LTN+ + +K++ L+ ++G P I+ +++ +
Sbjct: 325 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLRNLRH 383
Query: 223 MTII 234
++
Sbjct: 384 ANVV 387
>U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform b protein.
Length = 700
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 43 LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMIEVVEM 222
L TY L K G G +LTN+ + +K++ L+ ++G P I+ +++ +
Sbjct: 358 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLRNLRH 416
Query: 223 MTII 234
++
Sbjct: 417 ANVV 420
>U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform a protein.
Length = 577
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 43 LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMIEVVEM 222
L TY L K G G +LTN+ + +K++ L+ ++G P I+ +++ +
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLRNLRH 293
Query: 223 MTII 234
++
Sbjct: 294 ANVV 297
>AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein.
Length = 577
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 43 LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMIEVVEM 222
L TY L K G G +LTN+ + +K++ L+ ++G P I+ +++ +
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLRNLRH 293
Query: 223 MTII 234
++
Sbjct: 294 ANVV 297
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 426 SQSVNVPEINTCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRC 295
S ++N +IN+ FP +K N + P +R+F LSRC
Sbjct: 42 SLTINTDQINSSFP----IKFYHNAYVDYRYETPRLRIFALSRC 81
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 281 IEYTEQRERSNTLTDGSKIVDDIKVLP 361
IE+ RER N L GSK D++ ++P
Sbjct: 143 IEFERNRERFNFLKWGSKAFDNLLIVP 169
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 421 ICKCSRNKYLFSTSFPFENCW*YFNIVD 338
IC NKYL F F+N +FN+ D
Sbjct: 5363 ICSTGNNKYLLKNPFGFDNK--FFNLTD 5388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,132
Number of Sequences: 27780
Number of extensions: 361447
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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