Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060737.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 342 STILLPSVRVFDLSRCSVYSIS 277
           ST+ +PSV++ +  +CS+ SI+
Sbjct: 388 STLNIPSVKIDEDQKCSIESIT 409


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 242 WRSLYTKAVPESDIEYTE 295
           WR++ T+ VPE    +TE
Sbjct: 185 WRAVRTEEVPEDKCPFTE 202


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 90  NQPKEWHKDANKSPDHDQGPSSPAKEGEAFT 182
           N    +H+  +K+ D+D   S  A  GE+FT
Sbjct: 219 NSDDSFHRLTSKTFDNDLRYSELAVAGESFT 249


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 371 KWEGGGKQVFISGTFTDWET 430
           +WE   K+V ++GT+   ET
Sbjct: 91  RWESVQKEVTVTGTYQLTET 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,018
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)