Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060736.seq
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1NXM8 Cluster: PHP-like; n=2; delta proteobacterium ML...    34   3.7  
UniRef50_A6CEL2 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q1E1S6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q1NXM8 Cluster: PHP-like; n=2; delta proteobacterium
           MLMS-1|Rep: PHP-like - delta proteobacterium MLMS-1
          Length = 288

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = -2

Query: 427 ACALVSTQGGKVTLSSLYSGSNSLTFFPVQREENRTFGVGRRKIDIPSNNRNDSRQITQ- 251
           A  L++  GG   L+      N+L   P    E  T G+   +I  P++NR   RQ+ Q 
Sbjct: 174 AVRLIAAAGGVPVLAHPAVLDNNLNSLPRLLPELVTAGLAGLEIYYPAHNRRQYRQLQQL 233

Query: 250 ---WAT*GTG--DLHGNQRHNNMP 194
              W    TG  D HGN  H  +P
Sbjct: 234 AGEWRLLATGGTDFHGN-THGGVP 256


>UniRef50_A6CEL2 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 1295

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 409 TQGGKVTLSSLYSGSNSLTFFPVQREE--NRTFGVGRRKIDIPS 284
           T GGK  L+ L S S S    PVQ E   N T   G+ KID+P+
Sbjct: 484 THGGKGALAFLKSASQSKPVSPVQAESKPNDTLKPGQSKIDLPA 527


>UniRef50_Q1E1S6 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 1135

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/39 (46%), Positives = 30/39 (76%)
 Frame = -3

Query: 366 AIV*LSSLYSGRKTELSA*VEEKSTFPQTIETTVDKSLS 250
           ++V L+SL S ++  LS+ +EE+S+ P TIET ++KSL+
Sbjct: 376 SMVSLNSLPSAKRKLLSS-LEERSSVPVTIETPLEKSLA 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,161,597
Number of Sequences: 1657284
Number of extensions: 12482742
Number of successful extensions: 25418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25411
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)