Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060736.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    32   0.066
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.12 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   5.8  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.6  

>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 382 SLYSGSNSLTFFPVQREENRTFGVGRRKIDIPSNNRNDSR 263
           +L  G N++ FFP     N+TF   +R  +   NNRN ++
Sbjct: 89  ALMFGPNTVPFFPQTASSNKTFSKRKRSSENSFNNRNKAK 128


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 161 EKVFSHFSMYELVIKSLWLYYLYLAGFGILK--SLNFKQDNSKFK 33
           +K+   F  + L+ K  W YYL+   F IL+  +LN  + NSK +
Sbjct: 183 KKIIDIFDQFPLLTKKYWDYYLFKKAFLILEDANLNSFEKNSKLE 227


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 143 FSMYELVIKSLWLYYLYLAGFGILKSLNFKQD 48
           F++Y   I+++W+    +AG G+L S   KQ+
Sbjct: 538 FNVYANAIRTIWIVNCPVAGVGMLLSFFTKQE 569


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 287 GNVDFSSTYAESSVFLPLYREESQTIASAVQG 382
           GN  F  TY++  V L LYRE     A+ + G
Sbjct: 90  GNYKFK-TYSDCEVILYLYREHGPACANMLDG 120


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 167 VWEKVFSHFSMYELVIKSLWLYYLYLAGFGILKSLNFKQD 48
           V EK F  F+ Y   I+ +W+    +AG G+L S   KQ+
Sbjct: 531 VSEKNFV-FNAYANAIRMIWIVNCPVAGVGMLLSFFTKQE 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,301
Number of Sequences: 5004
Number of extensions: 54566
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)