Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060736.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    29   3.5  
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)                 28   6.0  
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       28   8.0  

>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 507 KHNIANYPSTTMAENFRCVRANVDTNAHAHLSVPREE 397
           + NI NY   T  ENF    A+ DT    H SV  E+
Sbjct: 784 RDNIPNYEDVTQGENF-TQHASEDTTPRGHHSVANEQ 819


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 489 YPSTTMAENFRCVRANVDTN 430
           YP  TMA N +C RA + TN
Sbjct: 7   YPRATMATNTKCSRATIATN 26


>SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)
          Length = 321

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 489 YPSTTMAENFRCVRANVDTN 430
           YP  TMA N +C RA + TN
Sbjct: 7   YPRATMATNTKCSRATIATN 26


>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 363 LLPLYREESVTFPPWVLTSAHAR*CLRLLSRT*NSPPLLCSGNLQYCVY 509
           +LP  R   V + PWV+ S +   CL  LSR         +   +YC+Y
Sbjct: 388 VLPTLRVAIVEYVPWVMLSKNVSDCLG-LSRVCERKYKALNRTEKYCIY 435


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 110 KEILLQVHTY*NVKRLFPKPITSNKK 187
           KE     HTY N +RLF  P+TS +K
Sbjct: 83  KECQTLAHTYNNRERLFNMPVTSYEK 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,365,485
Number of Sequences: 59808
Number of extensions: 401030
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)