Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060736.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    30   1.7  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   3.0  
AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical ...    29   3.0  

>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
            protein 17 protein.
          Length = 1146

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 549  LLNFIALLFISLLHKHNIANYPSTTMAENFRCVRANVDTNAHAHLSVPREEKLHFLPCTA 370
            LLN +  +F S++ ++++  Y   T+ + + CV      N H H+       L FL   A
Sbjct: 964  LLNDLYTIFDSIIEQNDV--YKVETIGDGYLCVSGLPHRNGHDHIKHIARMSLAFLSSLA 1021

Query: 369  E 367
            E
Sbjct: 1022 E 1022


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 406  GY*QVRMRVSVYVCSHAPK---ILRHCCARVICNIVF 507
            G  +V   V  +VC H P    IL HC A V  NI F
Sbjct: 2114 GIDKVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 406  GY*QVRMRVSVYVCSHAPK---ILRHCCARVICNIVF 507
            G  +V   V  +VC H P    IL HC A V  NI F
Sbjct: 2114 GIDKVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 406  GY*QVRMRVSVYVCSHAPK---ILRHCCARVICNIVF 507
            G  +V   V  +VC H P    IL HC A V  NI F
Sbjct: 2114 GIDKVTRLVGRFVCEHGPSSFLILEHCSANVDANIPF 2150


>AF016662-3|AAB66057.1|  461|Caenorhabditis elegans Hypothetical
           protein C33C12.5 protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 16  ITHFPNLNLELSCLKFKLLRIPKPARYK*YSQRDFITSSYILKCEKTFSQTYYFK*EELK 195
           I+H+P+ +  +  + F +LR+P+PA  K   ++ F+     L      ++    K  E++
Sbjct: 136 ISHYPHYSPNMDAVSFPILRLPQPA-LKNALRQMFLVEHISLSVLSAKAKQQVAKLNEIR 194

Query: 196 AYYYAF 213
              Y F
Sbjct: 195 GNIYLF 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,692
Number of Sequences: 27780
Number of extensions: 316103
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)