Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060736.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g40230.1 68414.m04784 hypothetical protein                          28   6.5  
At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote...    27   8.6  
At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (P...    27   8.6  
At2g17500.3 68415.m02024 auxin efflux carrier family protein con...    27   8.6  
At2g17500.2 68415.m02023 auxin efflux carrier family protein con...    27   8.6  
At2g17500.1 68415.m02022 auxin efflux carrier family protein con...    27   8.6  

>At1g40230.1 68414.m04784 hypothetical protein
          Length = 303

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 519 SLLHKHNIANYPSTTMAENFRCVRANVDTNAHAHLSVPREEKLHFLP 379
           SLL  H+I+ YP    +  F   R+   T++H+ LS+ +      LP
Sbjct: 39  SLLPHHSISPYPFPPTSSLFLSKRSTSKTHSHSRLSLDQTSLTISLP 85


>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 267

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 306 EEKSTFPQTIETTVDKSLSGLRRAPVTYMAIKGIIICLKF 187
           EE+   P   E   D+  SG  R P+     KG  +CL+F
Sbjct: 142 EEEEAEPNNEEDDEDQESSGKVRVPMVVSVQKGDGVCLEF 181


>At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (POR)
           identical to tubulin-folding cofactor C (Porcino; POR)
           GI:20514261 from [Arabidopsis thaliana]; identical to
           cDNA tubulin folding cofactor C  GI:20514260
          Length = 345

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 303 LLPTPKVRFSSRCTGKKVKLLLPLYREESVTFPP 404
           L+P  K  F S+ T KK +  LP  ++  V  PP
Sbjct: 137 LVPKKKFSFKSKSTTKKPESKLPEIQKPDVVLPP 170


>At2g17500.3 68415.m02024 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 396

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 255 LSGLRRAPVTYMAIKGIIICLKFFLFEVIGLG 160
           + GLR + V  M + GI+ C+++    +IG+G
Sbjct: 292 IQGLRSSAVKPMVVLGIV-CVRYIAMPIIGIG 322


>At2g17500.2 68415.m02023 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 396

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 255 LSGLRRAPVTYMAIKGIIICLKFFLFEVIGLG 160
           + GLR + V  M + GI+ C+++    +IG+G
Sbjct: 292 IQGLRSSAVKPMVVLGIV-CVRYIAMPIIGIG 322


>At2g17500.1 68415.m02022 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 396

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 255 LSGLRRAPVTYMAIKGIIICLKFFLFEVIGLG 160
           + GLR + V  M + GI+ C+++    +IG+G
Sbjct: 292 IQGLRSSAVKPMVVLGIV-CVRYIAMPIIGIG 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,040
Number of Sequences: 28952
Number of extensions: 287125
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)