Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060735.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 3.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.4
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 26 4.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.4
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 26 5.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.8
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 25 7.7
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.7
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 25 7.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.7
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 7.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 7.7
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 25 7.7
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 96 SNNPRLTSQNIIRFKTKRTLHRLILRHPQAPVNKR*NPVRLLPPA 230
S++PR+ +++ R+ + RT RL +R P A + R + LPP+
Sbjct: 142 SSSPRVPQKSLRRYYSTRTAQRLDVRRP-ASRSSRYSKTSDLPPS 185
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 51 RLLHRLDLHPLTQLLSNNPRLTSQNIIRFKTKRTLHRLILR 173
RL+H L L ++ NPRL SQ ++ + KR L L+
Sbjct: 850 RLIHSLSSEQLNAFVNENPRLKSQ--LQLQHKRQCLELALQ 888
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 256 PSEASKPDAPPTPLSSDPTAHGPILP 333
P + S P PP P+S P P +P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 489 SPLHPFPDSLLDGPLERSQ--GFSSEHLEALAWS 584
SPLHPF S++ E ++ G+ E L+A A++
Sbjct: 118 SPLHPFAQSIIKNRREYAERHGYKFEFLDADAYA 151
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 51 RLLHRLDLHPLTQLLSNNPRLTSQNIIRFKTK 146
RLL+ ++ L LL +P L SQN++R + K
Sbjct: 358 RLLNPDEIDKLCHLLGVSPELFSQNLVRPRIK 389
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 LILSSPIQATRLLHRL-DLHPLTQLLSNNPRLTSQNIIRFKTKRTLHRLILRHPQA 185
LI SS + AT L + L ++P T+ NP Q ++ + + HR +LR+ QA
Sbjct: 168 LIASSSMAATNLSNSLVRINPNTE----NPAKNKQIMVYYVDCKRAHRSLLRYIQA 219
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHK-ELFGISSPDHECTFLNRKRLNVSTLPFP 423
P P E ++P + ++ PT + PI+P L S T ++ N+S LP
Sbjct: 695 PASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVS----NISPLPTV 750
Query: 424 AQPCLLVAFAQASNSTPQRV 483
A P + + ++ S P++V
Sbjct: 751 APPNVSGSPSETPISKPEKV 770
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +2
Query: 104 PSSNVSKHHQVQNQAYLTPAHPETPPSPSKQEI--KSGETLATGFPNVATLSAPRKP-RN 274
P N +VQ + P + P K I KSGE T P+VA P KP +
Sbjct: 205 PKKNERGQWEVQYRVIGNPPNVAVPTHFFKVIIAEKSGEP--TSSPSVAAFVLPNKPIAD 262
Query: 275 QTPXXXXXVPIQQLMGPSSL 334
P VP++ + S L
Sbjct: 263 NFPLKNFAVPVEVVERASGL 282
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPDHECTFLN 387
P P+EAS P TP DP + +FG + E F +
Sbjct: 94 PASPAEASSPFTVRTPTVHDPEHYFVAQKLSSVFGTPDLEDETDFFD 140
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 202 KIR*DSCHRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHG 321
KI D+ +R + P R P +P TP+S +P G
Sbjct: 522 KIGHDALNRKNHASLPSRRIVYKPPSSPSTPISMNPRPKG 561
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.7
Identities = 21/64 (32%), Positives = 23/64 (35%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPDHECTFLNRKRLNVSTLPFPA 426
P P A P PLSS P P + G S+P N R ST P P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-PLGNASR--TSTPPVPT 419
Query: 427 QPCL 438
P L
Sbjct: 420 PPSL 423
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +1
Query: 220 CHRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGI 354
C R S K +EA K + P L S HG P E I
Sbjct: 35 CRRYSPLALSKEVTEALKNNVPVVALESTIITHGMPYPQNEELAI 79
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 116 VSKHHQVQNQAYLTPAHPETPPSPS 190
+SK H+ + TP P TP PS
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPS 410
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 101 QPSSNVSKHHQVQNQAYLTPAHPETPPSP-SKQEIKSGETLATG 229
QPSS+VSK +V + + PP P +Q+ G+ + +G
Sbjct: 52 QPSSDVSKVPEVTGSSSGISGGDQQPPRPLQRQQNTQGQGMKSG 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,541
Number of Sequences: 5004
Number of extensions: 55581
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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