Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060735.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313... 32 0.49
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 0.64
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832 31 0.64
07_03_1160 - 24430240-24431268 30 1.5
11_06_0610 - 25449085-25453284 29 2.6
08_02_1085 + 24237804-24238403 29 2.6
12_02_1226 - 27182423-27182768,27182855-27183765 29 3.4
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 29 3.4
07_03_1139 + 24254662-24255306 29 4.5
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 29 4.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 4.5
03_01_0515 - 3864796-3865425 29 4.5
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793... 28 6.0
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 28 6.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 6.0
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 28 6.0
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 28 6.0
02_04_0291 + 21637700-21638164 28 7.9
>10_07_0117 +
13028336-13028404,13029073-13029174,13031108-13031367,
13031813-13031882,13031935-13031966,13032736-13032823,
13033431-13033742,13033822-13033896,13034018-13034559,
13034936-13035044,13035713-13035892,13036243-13036404
Length = 666
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +1
Query: 274 PDAPPTPLSSDPTAHGPILPHK-----ELFGISSPDHECTFLNRK 393
P P P +SDP GP+L + + GI +HE F+NR+
Sbjct: 65 PSTPAGPPNSDPVNDGPVLSVRYSLDLKAIGIQRSNHEVEFINRE 109
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 235 KCCDPKRPSEASKPDAPPTPLSSDPTAHG-PILPHKELFGISSP 363
K C+P+ +++ KPDA P++ P P+LP + F + P
Sbjct: 1182 KSCEPEASNKSRKPDASHAPVNQHPKPESDPLLPDTQDFERTHP 1225
>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
Length = 118
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGP 324
P PS SKP TP DP+ HGP
Sbjct: 53 PLPPSSESKPPPAVTPSDDDPSRHGP 78
>07_03_1160 - 24430240-24431268
Length = 342
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 262 EASKPDAPPTPLSSDPTAHGPILPHK 339
E S+PD PP P+S P P +P K
Sbjct: 152 EPSRPDQPPQPISDGPPLPNPNVPPK 177
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPDHE 372
PK + + PP+P S P P+ PH S P E
Sbjct: 971 PKSSPPSHEEYVPPSPAKSTPPPEKPLPPHTPTINSSPPSEE 1012
>08_02_1085 + 24237804-24238403
Length = 199
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +2
Query: 101 QPSSNVSKHHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAP 259
Q + K N + + P PSPSK KSG+ A P A AP
Sbjct: 26 QAPAAAPKSSSSSNSSSGSHTSPSKAPSPSKSPEKSGKAPAAAPPKAAAAKAP 78
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 107 SSNVSKHHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQ--T 280
SS SK QV A P PE PP+ + + + A P V + P N+
Sbjct: 143 SSPPSKEVQVDYYATTQPKKPEEPPTVAAVQKDNCVPPAAPKPAVPATPSTSPPSNKEYA 202
Query: 281 PXXXXXVPIQQLMGPSS 331
P VP+ Q P++
Sbjct: 203 PAAPGVVPVNQPSSPAA 219
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 PDAPPTPLSSDPTAHGPIL-PHKELFGISSPDHECTFLNRKRLNVSTLPFPAQPCLLVAF 450
P P S + HGP+ P E + DH N ++ + P P QPC ++
Sbjct: 439 PQPQPASHSQPDSQHGPVASPTSE----EAQDHHIH--NTPDISPTNSPAP-QPCRIITL 491
Query: 451 AQASNSTPQ 477
A N+TPQ
Sbjct: 492 DVAFNTTPQ 500
>07_03_1139 + 24254662-24255306
Length = 214
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +1
Query: 175 TPKPQ*TRDKIR*DSCHRLSKCCDPKRPSEASKPD---APP--TPLSSDPT 312
TP P D S H S C PK P A +PD A P PL DP+
Sbjct: 123 TPPPHKPPDAAAVASSHDSSALCCPKTPPPAHRPDPATAVPHLPPLGRDPS 173
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +1
Query: 229 LSKCCDP--KRPSEASKPDAPP--TPLSSDPTAHGPILPHKE 342
L + C P +P A KP PP TP + PT P P ++
Sbjct: 771 LDRSCRPIMSKPKPAPKPQTPPPPTPPTESPTTPEPQTPEQQ 812
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILP 333
P PS S P PTP + P P+LP
Sbjct: 125 PTAPSPYSAPSPTPTPTHTQPRPSPPLLP 153
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 247 PKRPSEASKPD-APPTPLSSD--PTAHGPILP 333
P P+EAS P APP ++S P A GP++P
Sbjct: 40 PSPPTEASPPPLAPPPSVTSSPPPPAAGPLMP 71
>11_06_0470 +
23977394-23977503,23977755-23977922,23978724-23979367,
23979584-23979823,23980175-23980296,23980397-23981080
Length = 655
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 84 TQLLSNNPRLTS--QNIIR--FKTKRTLHRLILRHPQAPVNK 197
T LL NNP + IR + +R + R++L HP A +NK
Sbjct: 45 TDLLVNNPNFAGAIEAAIRNALENRRAIWRVLLTHPYAYINK 86
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 256 PSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSP 363
PS+A+ P PP P ++ P A P+ + GI++P
Sbjct: 148 PSDAAAPPPPPPPPAAAPAAPAPVAAGTK--GIATP 181
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 220 CHRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGPILPHKEL 345
CHR K P P + P P+ + P P LPH EL
Sbjct: 105 CHRRLKDRKPP-PKRQQLEEEVPVPVMAPPPVLPPPLPHSEL 145
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 217 SCHRLSKCCDPKRPSEASKPDAPPTPLSSD-PTAHGPI 327
SCH+L+ P P A P++P SS PT P+
Sbjct: 35 SCHQLNSASIPSLPHHAPLPNSPKHTWSSTVPTVPSPL 72
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 474 SASMGSPLHPFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGETSQHHR 635
SA +G P P + G + G + + + L+WS N ++ H T HH+
Sbjct: 247 SAKLGDPRALLPSEVAVG-FSTANGATFQLDQILSWSFNSTLASPHPVTKGHHK 299
>02_04_0291 + 21637700-21638164
Length = 154
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 362 GDEMPKSSL*GRMGP*AVGSELKGVGGASGFEASEGRLGSQHLESRWQESHR 207
GD + + G G + G E GG +G + EG G + LE RW+ R
Sbjct: 98 GDRLGSGGVRGLGGAGSCGGE----GGGAGSDNGEGSGGGRWLERRWKAPGR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,473
Number of Sequences: 37544
Number of extensions: 411615
Number of successful extensions: 1843
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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