Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060735.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 33 0.28
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 31 1.1
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 30 2.0
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 30 2.0
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 30 2.0
SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40) 30 2.0
SB_46925| Best HMM Match : PqqD (HMM E-Value=1.1) 29 2.7
SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1) 29 2.7
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 29 2.7
SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2) 29 3.5
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 29 4.6
SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16) 29 4.6
SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05) 29 4.6
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 28 6.1
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 6.1
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_43493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 28 8.1
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATL 250
T + TPP+ + EI S ETL+TG P+ TL
Sbjct: 269 TSLNQTTPPNETSTEILSNETLSTGLPSNQTL 300
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 31.9 bits (69), Expect = 0.50
Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +1
Query: 115 RLKTSSGSKPSVPYTGSS*DTPKPQ*TRDKIR*DSCHRLSKCCDPKRPSEASKPDAPPTP 294
RLK S+ S P P T S+ TP T S C P PS S P P TP
Sbjct: 6 RLKLSTPSTPCTPSTPSTPSTPSTPRTPS--------TPSTPCTPSTPSTPSTPITPSTP 57
Query: 295 LSSDPTAHG-PILPHKELFGISSPDHECT 378
S P H P P S+P CT
Sbjct: 58 --STPCTHSTPSAPSTP----STPSTPCT 80
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 204 NPVRLLPPAFQMLRP*APLGSLETR-RPSYSFKFRSNSSWAHPPS*RTFWHFISRSRV-- 374
+P+R P ++RP P+G R RP +++++W HP + W ++++
Sbjct: 378 HPIRSSPIGTTLIRP-RPIGDTLLRPRPICGHPSKTHANWCHPTKTQANWCHPTKTQANW 436
Query: 375 -HLFKSQATQC 404
H K+QA C
Sbjct: 437 CHPTKTQANWC 447
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 107 SSNVSKHHQVQNQAYLTPAHP---ETPPSPSKQEIKSGETLATGFP 235
SSN +H + N++ +P + P PS+QE+K G +A +P
Sbjct: 323 SSNYCRHPLLANKSRAETRNPFSCQDVPDPSQQELKIGHEIAIAYP 368
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPD 366
P P E +P PP+P SSDP P L +SPD
Sbjct: 1899 PVSPPERDQP--PPSPSSSDPFGSAPFLVQGGAAKATSPD 1936
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPD 366
P P E +P PP+P SSDP P L +SPD
Sbjct: 553 PVSPPERDQP--PPSPSSSDPFGSAPFLVQGGAAKATSPD 590
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 158 PAHPETPPSPSKQEIKSGE 214
P +P+TPPSP +I++GE
Sbjct: 318 PVYPQTPPSPGIDQIETGE 336
>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
Length = 837
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +2
Query: 167 PETPPSPSKQEIKSGETLATG---FPNVATLSAPRKPRNQTPXXXXXVPIQQLMGPSSLI 337
P PP PSKQ +K+ + ATG P+ P +P Q P S
Sbjct: 427 PNLPPPPSKQSVKAAKMAATGGAPTPSPTARVPPSQPSAQANLLSLESSSSTQSNPFSKG 486
Query: 338 KNFLAFHLPI 367
++F F PI
Sbjct: 487 QSFDPFADPI 496
>SB_46925| Best HMM Match : PqqD (HMM E-Value=1.1)
Length = 122
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 6 RGWRFLILSSPIQATRLLHRLDLHPLTQLLSNNPRLTSQNIIR 134
R ++F+ S P + T LL + D LT+L N+P + S N+I+
Sbjct: 81 REFQFINTSHPDERTFLLKKFD--KLTELPDNSPDIESDNLIK 121
>SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1)
Length = 215
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 6 RGWRFLILSSPIQATRLLHRLDLHPLTQLLSNNPRLTSQNIIR 134
R ++F+ S P + T LL + D LT+L N+P + S N+I+
Sbjct: 174 REFQFINTSHPDERTFLLKKFD--KLTELPDNSPDIESDNLIK 214
>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 273
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 140 NQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTP 283
N+ ++P HP PSP Q G+ T F A+ +AP P + P
Sbjct: 60 NRVNISPVHPPEEPSPDDQLPTGGDHPETEFEAPASDTAP-PPSGEIP 106
>SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2)
Length = 436
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 92 VIEQPSSNVSKHHQV-QNQAYLTPAHPETPPSPSKQEI-----KSGETLATGFPNVATLS 253
++ + K HQ+ ++ + + +T PSP KQ+I KSG T PN T
Sbjct: 223 LVRSTTPQSDKKHQIDKSSVFSKSSFAQTSPSPDKQQIEEVDSKSGLTQKNPIPNEETAV 282
Query: 254 APRKPRNQTP 283
A ++ P
Sbjct: 283 AVLNEQHAAP 292
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Frame = +1
Query: 70 TSIP*PNCYRTTLV*RLKTSSGSKPSVPYTG----SS*DTPK----PQ*TRDKIR*DSCH 225
TS P P+ R T L+ + SKP +P S +P+ PQ + I +
Sbjct: 368 TSTPGPSSARRTSYTGLQNHTPSKPPMPAKSPGRHSGQSSPRQASPPQSVKSPIHFQA-- 425
Query: 226 RLSKCCDPKRPSEASKPDAPPTPLSS 303
S P+R ASKP + P PLSS
Sbjct: 426 NKSPPFHPQRSPSASKPSSRPPPLSS 451
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 244 DPKRPSEASKPDAPPTPLSSDPTAHGPILPHKEL 345
+P RP E +P PP P +P H P PH+ L
Sbjct: 100 EPPRPQEPHRPQEPPRP--QEP--HRPQEPHRPL 129
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 244 DPKRPSEASKPDAPPTPLSSDPTAHGPILPHKEL 345
+P RP E+ +P PP P +P H P PH+ L
Sbjct: 178 EPTRPQESHRPLEPPRP--QEP--HRPQEPHRPL 207
>SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16)
Length = 320
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 513 SLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGET 620
++LD L+R+ GFS+E E +W N R+ RH T
Sbjct: 271 AMLDDYLQRN-GFSNETDEQTSWLTNRRLELRHHVT 305
>SB_44340| Best HMM Match : Tctex-1 (HMM E-Value=5.6e-05)
Length = 369
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 594 DNSNSRRELRGVLS*SLESVLR--DHQEGNQEKGAKVSPYSLRGRI*GLSKSNKK 436
DN S+ LR ++S L+SVLR D+ K V + GR+ KS K
Sbjct: 84 DNFESQELLRQIISEELDSVLRDCDYDSERSVKQGSVISQRVEGRVKSAVKSGTK 138
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 244 DPKRPSEASKPDAPPTP-LSSDPTAHGPILP 333
DP PS+ + P P P LSSDPT GP P
Sbjct: 78 DPTAPSDPTGPTGPSDPTLSSDPT--GPSDP 106
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 474 SASMGSPLHPFPDSLLDGPLERSQGFSSEHLEALAWSLNYRVSYRHGETSQH 629
++++G P D D PLE S SEH+E ++ + + +G SQH
Sbjct: 1248 NSNVGRPSKVVADGRADSPLEVSLNAVSEHIENFGYNDEW---WNNGVDSQH 1296
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +2
Query: 98 EQPSSNVSKHHQVQNQAYLTPAHPETP---------PSPSKQEIKSGETLATGFPNVATL 250
+ PSS + +Q + TP+H ++P +PSKQ S +T+ + N +T
Sbjct: 482 DTPSSQSALSNQTMHSNRSTPSHQKSPSNQTMHSNRSTPSKQSSPSNQTMHS---NRSTP 538
Query: 251 SAPRKPRNQTPXXXXXVPIQQ 313
S P NQT P Q
Sbjct: 539 SNQSTPSNQTMHSNRSTPSNQ 559
>SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 657 KHGASSGPYGVEMFRHADKRRDNSNSRRELRGVLS*SL--ESVLRDHQE 517
+ A G + + R A KRRD+S+S E+ VLS +L SVL + +E
Sbjct: 112 RENAHKGKHARKAHRVAAKRRDSSSSDSEIGLVLSHALSASSVLEEPEE 160
>SB_43493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 146 AYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTP 283
A++ P + P ++ G T ATGFP T A PR QTP
Sbjct: 407 AFIAPIISQAPVISRATPLQPGITAATGFP---TPGAYVSPRFQTP 449
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = -1
Query: 466 NLRLEQKQQEDRAEQGKEALTH*VACD---LKRCTRDREMKCQKVLYEGGWAHELLDRNL 296
+L +K++ ++ +EAL V + +KR ++++K +++ +G W E+LD+ L
Sbjct: 1034 SLNNRRKRKMKSVKKWREALKREVIMEWNAMKRKYENKKVKTKRLRKKGPWTGEILDKIL 1093
Query: 295 KE 290
E
Sbjct: 1094 AE 1095
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 202 KIR*DSCHRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGP 324
+IR + + SKC +P +K APP P+ P A P
Sbjct: 1204 RIREPADSQTSKCTTSPQPYPETKSRAPPPPIHPAPPAAPP 1244
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 119 SKHHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTPXXXXX 298
S HHQ Q+ + HP PP+P Q + P + P+ Q P
Sbjct: 708 SAHHQCQHDKHSCGPHP-VPPTPLVQHPEPEAPPQLPPPPPFIVDDTESPQEQPPTTPVS 766
Query: 299 VPIQQLM 319
P+QQL+
Sbjct: 767 -PLQQLL 772
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/59 (20%), Positives = 31/59 (52%)
Frame = +3
Query: 204 NPVRLLPPAFQMLRP*APLGSLETRRPSYSFKFRSNSSWAHPPS*RTFWHFISRSRVHL 380
+P+R P + + A L + +++ ++ ++W HPP ++ W+ S+++ +L
Sbjct: 363 HPIRPRPIVATLTKTQAYLCHPTKTQANWNHPSKTQANWYHPPKTQSNWYHPSKTQAYL 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,292,063
Number of Sequences: 59808
Number of extensions: 438635
Number of successful extensions: 1950
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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