Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060735.seq
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 2.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 2.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 2.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 2.7
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 2.7
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 2.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.6
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 3.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 3.6
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 3.6
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 3.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 3.6
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 4.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 22 4.7
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 4.7
X91509-1|CAA62809.1| 103|Apis mellifera histone H4 protein. 22 6.3
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNR 243
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 202 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNR 248
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNR 243
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.0 bits (47), Expect = 2.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNR 243
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 657 KHGASSGPYGVEMFRHADKR 598
+H A YG+ RH DK+
Sbjct: 481 EHSARLNVYGLPFIRHMDKK 500
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 186 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 232
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 186 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 232
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 537 VLRDHQEGNQEKGAKVSPYSLRGRI*GL----SKSNKKTGLSRERKR 409
V+ + GN+ K S SLR R G S+ +++ SR+R R
Sbjct: 197 VVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNR 243
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 95 IEQPSSNVSKHHQVQNQAYLTPAHPETPPS 184
I +PS N + H + +P +TPPS
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQTPPS 402
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 562 CSELKP*ERSKGPSRRESGK 503
C P R PSR+ESG+
Sbjct: 389 CVACSPPPRQTPPSRKESGR 408
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -1
Query: 460 RLEQKQQEDRAEQGKEALT 404
++ +K++ED ++GKE+ T
Sbjct: 209 KVPEKKKEDEIDEGKESKT 227
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 4.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 125 HHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPR 271
HHQ Q+ +L H PP+ S+ ++ AT P PR
Sbjct: 355 HHQTQSLQHL---HYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPR 400
>X91509-1|CAA62809.1| 103|Apis mellifera histone H4 protein.
Length = 103
Score = 21.8 bits (44), Expect = 6.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 573 ELRGVLS*SLESVLRD 526
E RGVL LE+V+RD
Sbjct: 54 ETRGVLKVFLENVIRD 69
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,942
Number of Sequences: 438
Number of extensions: 4213
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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