Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060735.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 37 0.011
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family... 31 0.54
At2g25650.1 68415.m03074 DNA-binding storekeeper protein-related... 30 1.6
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 29 2.2
At5g64640.1 68418.m08124 pectinesterase family protein contains ... 29 2.9
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 29 2.9
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family... 29 2.9
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 3.8
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 3.8
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam... 29 3.8
At1g63840.1 68414.m07226 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At5g59270.1 68418.m07427 lectin protein kinase family protein co... 28 5.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 5.0
At1g49420.1 68414.m05540 heavy-metal-associated domain-containin... 28 5.0
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 28 5.0
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 6.6
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro... 28 6.6
At3g52270.1 68416.m05745 hypothetical protein 28 6.6
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 6.6
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 6.6
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 27 8.8
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 27 8.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 8.8
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 27 8.8
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 167 PETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTPXXXXXVP-IQQLMGPSSLI 337
P PPSP + T AT N++ L PR P+ QTP +P I ++ ++LI
Sbjct: 59 PPPPPSPPQPLPPPAPTFATFPANISALVLPRSPKPQTPSRTLLIPAISAVLAAATLI 116
>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTA-HGPILPHKELFGISSPDHECTFLNRKRLNVSTLPFP 423
P+RP A+ PD+ P+ H P L + P H LN+S LP
Sbjct: 4 PRRPPSATAPDSDDDKPDDPPSVWHRPTSSLPALPSLDPPSHGSHHWRNHSLNLSPLPTT 63
Query: 424 AQPCL 438
+ P L
Sbjct: 64 SSPPL 68
>At2g25650.1 68415.m03074 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 386
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 609 ADKRRDNSNSRRELRGVLS*SLESVLRDHQEGNQEKGAK 493
A++ RDN + R+ + + S S E +L++H+E E GA+
Sbjct: 215 AEEIRDNDETARKAQQLESESEEEMLKEHEEPFNENGAE 253
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -2
Query: 612 HADKRRDNSNSRREL--RGVLS*SLESVLRDHQEGNQEKGAKVSPYSLRGRI*GLSKSNK 439
H D+R + R EL +G L ++ L ++ GNQE+G +P++ R + KS
Sbjct: 432 HFDRRSERGRDRSELPSQGRLRDRIKGRLEENHSGNQERGFG-APWARRREMEDERKSAP 490
Query: 438 KTGLSRERKR 409
K+ SRE +
Sbjct: 491 KS--SREESK 498
>At5g64640.1 68418.m08124 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 602
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 107 SSNVSKHHQVQNQAYLTPAHP--ETPPSPSKQEIKSGETLATGFPN--VATLSAP 259
S + HH +Q + HP ETPPSP AT FP+ VA+LS P
Sbjct: 59 SKSSRNHHNPSHQTPTSDDHPPPETPPSPPPIAQIRLACNATRFPDHCVASLSKP 113
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 217 SCHRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGP 324
SC S C +P P ++S P P P S+ TA P
Sbjct: 32 SCTMCSSCDNPCSPVQSSPPPPSPPPPSTPTTACPP 67
>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 IEQPSSNVSKHHQVQNQAYLTPAHPETPPSP-SKQEIKSGETLATGFPNVA 244
IE + KHH + + H PP P KQ++ +G+T+ F VA
Sbjct: 59 IESNKAIHEKHHHRRKKWRQRRHHKHPPPPPPKKQKVNTGKTVGLFFAGVA 109
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 124 TSSGSKPSVPYTGSS*DTPKPQ*TRDKIR*DSCHRLSKCCDPKRPSEASKPDAPPTPL-S 300
T S + PS P T + T + + S PK P+ S+ PPTP+
Sbjct: 29 TKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPE 88
Query: 301 SDPTAHGPIL 330
S P P++
Sbjct: 89 SSPPVPAPMV 98
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTP 283
TP++P +PPSP++ G PN + S PR P N P
Sbjct: 95 TPSNPRSPPSPNQ-----------GPPNTPSGSTPRTPSNTKP 126
>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 823
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 27 LSSPIQATRLLHRLDLHPLTQLLSNNPRLTSQNIIRFKTKRTLHRL 164
L S + TRL+ R++ + SN R NI+R K KR HR+
Sbjct: 375 LGSSDEVTRLVERVEA-TFIKHFSNANRSKGMNILRPKAKRERHRI 419
>At1g63840.1 68414.m07226 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHA1a
(GI:3790554) [Arabidopsis thaliana]' similar to BRH1
RING finger protein [Arabidopsis thaliana] GI:4689366;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 166
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 256 PSEASKPDAPPTPLSSDPTA--HGPILPHKELFGISSPDHEC 375
P S PD PPT D A G +LP I+ P+ EC
Sbjct: 47 PVSTSWPDPPPTLTKPDSAAILAGEMLPVVRFSDINRPESEC 88
>At5g59270.1 68418.m07427 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 668
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 229 LSKCCDP-KRPSEASKPDAPPTPLSSDPTA 315
LSK DP RP S P PP P + PT+
Sbjct: 256 LSKILDPPNRPPPPSSPPPPPPPPPTPPTS 285
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +2
Query: 104 PSSNVSKHHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTP 283
P S S + +P P TPP+P I G+ P+ + P P + +P
Sbjct: 543 PGSPPSPSSPTPSSPIPSPPTPSTPPTP----ISPGQNSPPIIPS-PPFTGPSPPSSPSP 597
Query: 284 XXXXXVPIQQLMGPS 328
+P ++GP+
Sbjct: 598 PLPPVIPSPPIVGPT 612
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTPXXXXXVPIQQLMGPS 328
TP P +PPSP S T ++ P+ T S P P + +P GPS
Sbjct: 539 TPTSPGSPPSP------SSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTGPS 590
>At1g49420.1 68414.m05540 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 178
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 223 HRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSP 363
H K +P++P EA KP P P + A G + G + P
Sbjct: 74 HVAQKPKEPEKPKEAEKPKEPEKPKPAAAPAQGDPSSQRVTHGYNPP 120
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 167 PET-PPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQT 280
PE+ PP P + E +S T+ + FP T S P + QT
Sbjct: 18 PESHPPPPPQLESQSPSTVVSSFPAPVTPSPPSQEEIQT 56
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 223 HRLSKCCDPKRPSEASKPDAPPTPLSSDPTAHGPILPH 336
H L P ++ P+ PP + P A P LPH
Sbjct: 853 HSLPSVLQPPLQPQSQPPEPPPEMMPPPPQALPPPLPH 890
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 247 PKRPSEASKPDAPPTPLSSDPTAHGPILPHK 339
PK+P K D PP P+ PT P P K
Sbjct: 295 PKKPCPPKKVDPPPVPVHKPPTKK-PCPPKK 324
>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
protein
Length = 221
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/63 (25%), Positives = 24/63 (38%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTPXXXXXVPIQQLMGPSSL 334
TP HP PSPS ++ P LS+P P + GP++
Sbjct: 137 TPRHPSPSPSPSASPVRKALLSPAPIPVHKALSSPAPTPGVDPSHSEV--LAPAPGPAAA 194
Query: 335 IKN 343
++N
Sbjct: 195 VRN 197
>At3g52270.1 68416.m05745 hypothetical protein
Length = 364
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 244 DPKRPSEASKPDAPPTPLSSDPTAHGPILPHKELFGISSPDHECTFLNRKRLNVSTLPF 420
DP RP + +PDA L DP AH +LF +SS +H F + L + +L F
Sbjct: 48 DPYRPDDPYRPDA-KVILGVDPLAHED--EGTQLFRVSS-NHSGKFHPLRNLLLHSLKF 102
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKP 268
TP+HP TP P+ SG ++ P + P P
Sbjct: 116 TPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPSP 153
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 155 TPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKP 268
TP+HP TP P+ SG ++ P + P P
Sbjct: 116 TPSHPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPSP 153
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 110 SNVSKHHQVQNQAYLTPAHPETPPSPSKQEIKSGETLATGFPNVATLSAPRKPRNQTPXX 289
S+ S + + +Y P HP + P P K G A G+P A P+ P+ P
Sbjct: 472 SDKSITEKKKKMSYQDPQHPVSAPPPQGYPPKEGYPPA-GYPPPAGYPPPQYPQAGYPPA 530
Query: 290 XXXVPIQ 310
P Q
Sbjct: 531 GYPPPQQ 537
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 181 KPQ*TRDKIR*DSCHRLSKCCDPKRPSEASKPDAPPTPL 297
K + ++DK R D H+L +CC S PPTPL
Sbjct: 795 KKKKSKDKERCDESHKLERCC-------VSMQVCPPTPL 826
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 253 RPSEASKPDAPPTPLSSDPTAHGP 324
+PS++SKP+ P TP P P
Sbjct: 415 KPSDSSKPETPKTPEQPSPKPQPP 438
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 241 CDPKRPSEASKPDAPPTPLSSDPTAHGPI 327
C P P KP PP P + P A P+
Sbjct: 68 CPPTPPKPQPKPAPPPEPKPAPPPAPKPV 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,333
Number of Sequences: 28952
Number of extensions: 311087
Number of successful extensions: 1081
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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