Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060732.seq
         (456 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VR50 Cluster: Solute carrier family 35 member E1 homo...    33   2.2  
UniRef50_A3DHW5 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  

>UniRef50_Q9VR50 Cluster: Solute carrier family 35 member E1
           homolog; n=6; Endopterygota|Rep: Solute carrier family
           35 member E1 homolog - Drosophila melanogaster (Fruit
           fly)
          Length = 373

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 LASCAHVXYVKFSQ*CRGKLALTELPXPLTMTAVQLCATXL 327
           L  C     +  S    GK+ L E P P+T+T VQLC+  L
Sbjct: 15  LLMCLFWYVISSSNNVIGKMVLNEFPFPMTVTLVQLCSITL 55


>UniRef50_A3DHW5 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 352

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 137 KQSFYHRITEDL*FNNSLLFRTIHE--IXLCNIYIFGNQACLYYIS 6
           K+ FY+ I EDL + NSL+F  + E  I   +I +F N+   Y++S
Sbjct: 212 KKDFYNSILEDLKY-NSLIFYAVFEDRIISMSIILFANKQMHYHLS 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,170,704
Number of Sequences: 1657284
Number of extensions: 5973208
Number of successful extensions: 10012
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10011
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)