Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060732.seq
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   0.90 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.8  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +2

Query: 74  YGIIMNY*IKDLQ*FCDRNFALEYFLIKXKRNGYKXLQARDTNSWLPVRTWXM 232
           Y +  NY  K+++ + D  + L+YF+   + N Y          W+    + M
Sbjct: 200 YIVNTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYYMREMLPYWMSSSQYHM 252


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +2

Query: 74  YGIIMNY*IKDLQ*FCDRNFALEYFLIKXKRNGYKXLQARDTNSWLPVRTWXM 232
           Y +  NY  K ++ + D  + L+YF+   + N Y          W+    + M
Sbjct: 200 YIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREMLPYWMSSSQYHM 252


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 VQPVMSGQTGINRATXXTNYDSGT 308
           ++ + SGQT + RA+      +GT
Sbjct: 529 LEAIRSGQTSVQRASTEFGIPTGT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,306
Number of Sequences: 438
Number of extensions: 1716
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)