Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060731.seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    27   1.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   4.0  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    25   7.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   7.0  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   7.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.2  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 PNCCVCGNFICLLAGI 175
           PNC  CG  IC++ GI
Sbjct: 209 PNCLNCGKIICIVEGI 224


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 102 FGYRPPLNQNQFGY-KPNLNQPQFGYRPQLN 13
           FG++  +N+N + Y  PNLN+P F +  Q++
Sbjct: 287 FGFQ--INENDWKYANPNLNRPPFLHNDQIS 315


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = -2

Query: 120 PQNQTHFG---YRPPLNQNQFGYKPNLNQPQFGYRPQ 19
           P  Q + G   Y P  N  Q GY P    PQ GY  Q
Sbjct: 16  PPQQAYGGPNYYPPQQNYPQQGYAPPQGYPQGGYPAQ 52


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 150  LPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFGY 28
            + Q QQ  Y  + Q   GY+ P+  N +       Q  +GY
Sbjct: 1300 MQQQQQQYYGTEMQPDMGYQQPMMSNYYDPMQMQQQTPYGY 1340



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 99   GYRPPLNQNQFGYKPNLNQPQFGYRPQLNQLVP 1
            GY  P+     GY+P + QP  G +P +  ++P
Sbjct: 1061 GYMQPIPVQATGYQPLMVQPT-GLQPHMTGVMP 1092


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 160 TNKITTNAT--IRISTSKSNSFWISTTFEPKSIWLQTKLKSTSIRLQTP 20
           TN+ +T  T    ISTS S++   ST+F  +S    + + ++S  + TP
Sbjct: 644 TNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTP 692


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 482 LPEDLLRIVRLKGCDSLEKALSIVLEEVNFMFQYSSRNKMLKQQN 348
           LPE  L  VRLK  D L+KAL   L+        SS  ++ K+ N
Sbjct: 699 LPESELE-VRLKAADELKKALDAELKSKKVDPGRSSMEQLEKRLN 742


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 114 NQTHFGYRPPLNQNQFGYKPNLNQPQFGYRPQLNQLVP 1
           N TH  Y  P  QN +   P+LNQP      Q   L P
Sbjct: 179 NNTH-QYLKPYVQNVYPQMPSLNQPGLHIVNQPTYLAP 215


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 543 LSSCIKFTFGNQSTFNMLYFYYR 611
           LS+CI + FG+ +  +  Y Y+R
Sbjct: 97  LSACIAYDFGHGAELSTSYAYFR 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,093
Number of Sequences: 5004
Number of extensions: 50999
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)