Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060731.seq
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0892 - 6827510-6827590,6829348-6830412                           33   0.14 
05_04_0035 + 17378541-17381276                                         31   1.0  
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491...    31   1.0  
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573...    28   7.2  

>06_01_0892 - 6827510-6827590,6829348-6830412
          Length = 381

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -2

Query: 210 NQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFG 31
           ++PQ    F+   P  +Q + P     GYRPQ++    Y      + +G KP   QP +G
Sbjct: 78  SKPQPAYGFR---PQHEQQQQPSYASSGYRPQHEQQQSY----GSSGYGSKP---QPAYG 127

Query: 30  YRPQLNQ 10
           +RPQ  +
Sbjct: 128 FRPQAEE 134


>05_04_0035 + 17378541-17381276
          Length = 911

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 252 QYKFGIPQNVAT-MSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYR-PPLN 79
           Q   GI Q   T  S+ P  Q  F    P       PQTQQ GY   +  H G+  P + 
Sbjct: 706 QQSVGIGQVQQTDYSSGPPMQPGFGHPQPPQPMHSAPQTQQPGYGTSHPWHTGFNAPQVQ 765

Query: 78  QNQFG 64
           Q  +G
Sbjct: 766 QPSYG 770



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 162 KQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFGYRP 22
           K + LP   +  YRP+N          NQ +  Y P+  QP +G +P
Sbjct: 569 KPVPLPPQPRPEYRPRNSPQGLPGFASNQTRGSYMPHQGQPTYGSQP 615


>01_06_0747 -
           31645136-31646521,31647870-31648142,31649080-31649148,
           31649486-31649614
          Length = 618

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = -2

Query: 207 QPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPP----LNQNQFGYKPNLNQP 40
           QPQ  N  +F     +Q +L  TQQF  +P  Q +    PP      Q+     P   QP
Sbjct: 356 QPQLSNTQQFPPQPMQQPQLSNTQQFAPQPVQQPNAQQFPPPPVQPQQSNTQLPPQAMQP 415

Query: 39  QFGYRPQLNQLVP 1
           Q  + P  NQ+ P
Sbjct: 416 Q-QHPPVQNQMRP 427


>07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,
            5736602-5736739,5736852-5737052,5737859-5737986,
            5738114-5738189,5738354-5738503,5738594-5739115,
            5739208-5739357,5739559-5739807,5740249-5740440,
            5740890-5740937,5741589-5741717,5741821-5741935,
            5742044-5742159,5742341-5742415,5742562-5742696
          Length = 998

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 213  SNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQ 37
            +NQP Q +   F  P   Q+ +P T  F     +   +GY   +N N+   +P   Q Q
Sbjct: 923  TNQPFQTDLSLFHDPYPPQVGVPNTNPF----VDDNLYGYPQYMNMNEANPQPTYEQAQ 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,520
Number of Sequences: 37544
Number of extensions: 258135
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)