Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060731.seq
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 30 1.8
SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014) 29 2.4
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 29 4.2
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 28 5.6
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 28 5.6
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 5.6
SB_50176| Best HMM Match : RCSD (HMM E-Value=4.9) 28 7.4
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_15568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -2
Query: 240 GIPQNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQ-NQTHFGYRPPLNQNQFG 64
G Q + NQP + + G P + Q + P + Q +QTH Q Q
Sbjct: 125 GQQQPPQQLENQPPTEQNQQGGQPVNPQPQCPGAGEDNRNNQTSQTHQEQSHQQQQQQDQ 184
Query: 63 YKPNLNQPQFGYRPQ 19
KP++ P+ +PQ
Sbjct: 185 QKPDMQPPEHATQPQ 199
>SB_19476| Best HMM Match : Extensin_2 (HMM E-Value=0.014)
Length = 366
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = -2
Query: 234 PQNVATMSNQPQQQNKFKFGIPASKQIK---LPQTQQFGYRP-QNQTHFGYRPPLNQNQF 67
PQ A + P Q++ +P+ + K +P + GY P Q Y P Q
Sbjct: 120 PQRDAKYAPVPPQRDAKYAPVPSQRDAKYAPVPPQRDAGYAPVPPQRDAKYAPVPPQRDV 179
Query: 66 GYKPNLNQPQFGYRP 22
GY P Q GY P
Sbjct: 180 GYAPVPPQRDAGYAP 194
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = -2
Query: 234 PQNVATMSNQPQQQNKFKFGIPASKQIK---LPQTQQFGYRP-QNQTHFGYRPPLNQNQF 67
PQ A + P +++ +P + K +P + GY P Q Y P Q
Sbjct: 43 PQRDAKYAPVPPKRDAKYASVPPQRDAKYAPVPPQRDAGYAPVPPQRDAKYAPVSPQRDA 102
Query: 66 GYKPNLNQPQFGYRP 22
GY P +Q GY P
Sbjct: 103 GYAPVPSQRDAGYAP 117
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 186 IYFAVEVDLTWLRHSVEYQIYTELCVTNEMRFYYI 290
+YF+V+ TWLRH +++ + +L + +R YI
Sbjct: 565 LYFSVKTGSTWLRHYIDHS-FVDLHKVDGIRGVYI 598
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = -2
Query: 234 PQNVATMSNQPQQQNKFKFGIPASKQIK---LPQTQQFGYRP-QNQTHFGYRPPLNQNQF 67
PQ A + P Q++ +P + K +P + GY P Q GY P
Sbjct: 121 PQRDAGYAPVPPQRDAGYAPVPPQRDAKYAPVPPQRDAGYAPVPPQRDAGYAPVPPLRDV 180
Query: 66 GYKPNLNQPQFGYRPQLNQ 10
GY P Q Y P+L Q
Sbjct: 181 GYAPVPPQRDAKYAPELIQ 199
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = -2
Query: 234 PQNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKP 55
PQ ++MS+Q QQ + + I A +Q++ Q QQ Q Q PP +
Sbjct: 666 PQLQSSMSSQQQQPQQHQ--ISAQQQLQQQQHQQQQLLQQQQQQQSQMPPQSSQSMTGGQ 723
Query: 54 NLNQPQFGYRPQLNQL 7
N Q G NQ+
Sbjct: 724 NNTQSLTGQGQGKNQM 739
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 129 GYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFGYRPQLN 13
G P N F +PP N F +P N P F +P N
Sbjct: 282 GQPPYNNPLFTGQPPYNAPPFTGQPPYNAPPFNGQPPYN 320
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 129 GYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFGYRP 22
G P N F +PP N F +P N P F +P
Sbjct: 293 GQPPYNAPPFTGQPPYNAPPFNGQPPYNTPPFNGQP 328
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 141 TQQFGYRPQNQTH-FGYRPPLNQNQFGYKPNLNQPQFGYRPQLN 13
T F +P T F +PP N F +P+ N P F +P N
Sbjct: 354 TPPFNGQPLYHTPPFNGQPPYNTPPFNGQPSYNTPPFNGQPPYN 397
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 147 PQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNL-NQPQFGYRPQ 19
PQ Q + P Q H+ NQ GY P P GY PQ
Sbjct: 805 PQAQPPPHAPPGQAHYQQLGAAAPNQGGYHPQQPPPPPQGYEPQ 848
>SB_50176| Best HMM Match : RCSD (HMM E-Value=4.9)
Length = 396
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -1
Query: 235 STECR--NHVKSTSTAK*I*IWNSR*QTNKITTNATIRI-STSKSNSFWISTTFEPKSIW 65
ST+ R + VKST + +++ +T +A +R ST KS +T + +
Sbjct: 97 STQVRTPSTVKSTQVRTPSIVKSAQVRTPSTVISAQVRTPSTVKSTQVRTPSTVKSAQVR 156
Query: 64 LQTKLKSTSIRLQTPVKSAR 5
+ +KST +R + VKSA+
Sbjct: 157 TPSTVKSTQVRTPSTVKSAQ 176
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Frame = -2
Query: 261 HTTQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQI----KLPQTQQFGYRPQNQTHFGY 94
H + P + MSN+P + +P + I K F PQ Q
Sbjct: 2381 HVDGFSQSPPMSTLNMSNRPVSMSPVDPNLPFTTAIGSFTKPAPIGHFQMPPQQQQPVIQ 2440
Query: 93 R-PPLNQNQFGYKPNLNQPQFGYRPQLNQ 10
+ P Q Q KP+ Q Q RPQ Q
Sbjct: 2441 QFTPFQQQQVHIKPHQLQHQLQVRPQTQQ 2469
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = -3
Query: 350 NTQCTAPRPQPFNNFQFSDKNVIKP-----HFISNTQLSINLVFH---RMSQPCQINLNS 195
N+ C QP N NV +P H + IN H R+ QP IN+NS
Sbjct: 531 NSHCHPSVDQPINANSHCHPNVDQPINATFHCHPSVDQPINTNSHCQPRIDQP--INVNS 588
Query: 194 KINLNLEFPLANK*NYHKR 138
+ +++ P+ K +YH R
Sbjct: 589 HNHPSVDQPINAKSHYHSR 607
>SB_15568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 440 DSLEKALSIVLEEVNFMFQYSSRNKMLKQQNTQC--TAPRPQPFNNFQFSDKNVIKPHFI 267
D+LEKA + L+ FM R+ + K+ C T+ + N ++ +KP
Sbjct: 169 DALEKAGLVSLKNRRFMLCQQFRSSLCKENPLHCLATSRSAKGVNQYKLRRSAPMKPKIC 228
Query: 266 SNTQLS 249
+ +LS
Sbjct: 229 NTNRLS 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,625
Number of Sequences: 59808
Number of extensions: 340144
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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