Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060731.seq
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 29 2.1
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical pr... 29 2.1
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 29 2.1
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 29 2.1
AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical ... 29 2.1
AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical ... 29 2.1
Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 4.9
AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine re... 28 4.9
U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF125463-1|AAD12861.2| 263|Caenorhabditis elegans Hypothetical ... 28 6.5
Z83107-8|CAB05504.1| 348|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 27 8.6
AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical... 27 8.6
AF104859-1|AAC79091.1| 93|Caenorhabditis elegans putative RNA-... 27 8.6
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 27 8.6
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 207 QPQQQNKFKFGIPASKQIKLPQTQQFGYRPQ-NQTHFGYRPPLNQNQFGYKPNLNQPQFG 31
Q QQ N F G P +Q + Q QQF +PQ Q Y+ L Q Q Y+P Q
Sbjct: 26 QHQQFNNFN-GFPQFQQQQFQQPQQFQQQPQFQQQQQNYQQFLAQQQ--YQPQFQAQQQP 82
Query: 30 YRPQLNQ 10
+PQ Q
Sbjct: 83 QQPQYFQ 89
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 31.1 bits (67), Expect = 0.70
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 258 TTQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQI-KLPQTQQFGYRPQNQTHFGYRPPL 82
T Q ++G Q+ ++Q Q + P QI +LPQ QQ + NQ + PP
Sbjct: 299 TQQQQYGQVQHQGNYNSQNYNQQQ-----PQQPQIPQLPQQQQQYNQQYNQQ---FNPPY 350
Query: 81 NQNQFGYKPNLNQPQFGYRPQLNQ 10
Q Q + NQ Q PQ NQ
Sbjct: 351 QQFQQPQQQQYNQQQQQQTPQQNQ 374
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 207 QPQQQN-KFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFG 31
QPQQQ + +Q + Q QQ+G +PQ Q ++ QNQ Y P QPQ
Sbjct: 355 QPQQQQYNQQQQQQTPQQNQYNQQQQYGQQPQ-QPQQPHQQQY-QNQNNYLPQPQQPQLP 412
Query: 30 YRPQ 19
PQ
Sbjct: 413 VAPQ 416
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 31.1 bits (67), Expect = 0.70
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 258 TTQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQI-KLPQTQQFGYRPQNQTHFGYRPPL 82
T Q ++G Q+ ++Q Q + P QI +LPQ QQ + NQ + PP
Sbjct: 301 TQQQQYGQVQHQGNYNSQNYNQQQ-----PQQPQIPQLPQQQQQYNQQYNQQ---FNPPY 352
Query: 81 NQNQFGYKPNLNQPQFGYRPQLNQ 10
Q Q + NQ Q PQ NQ
Sbjct: 353 QQFQQPQQQQYNQQQQQQTPQQNQ 376
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 207 QPQQQN-KFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQPQFG 31
QPQQQ + +Q + Q QQ+G +PQ Q ++ QNQ Y P QPQ
Sbjct: 357 QPQQQQYNQQQQQQTPQQNQYNQQQQYGQQPQ-QPQQPHQQQY-QNQNNYLPQPQQPQLP 414
Query: 30 YRPQ 19
PQ
Sbjct: 415 VAPQ 418
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -2
Query: 195 QNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQN--QFGYKPNL----NQPQF 34
QN + G ++PQ + + Q +H +P +NQN Q Y PN + P +
Sbjct: 794 QNNPQHGPSPFNYSQVPQPA-YNHVGQQPSHMSNQPHINQNGYQNSYNPNQGPTSSDPNY 852
Query: 33 GYRPQLN 13
G PQ N
Sbjct: 853 GCNPQFN 859
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -2
Query: 195 QNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQN--QFGYKPNL----NQPQF 34
QN + G ++PQ + + Q +H +P +NQN Q Y PN + P +
Sbjct: 798 QNNPQHGPSPFNYSQVPQPA-YNHVGQQPSHMSNQPHINQNGYQNSYNPNQGPTSSDPNY 856
Query: 33 GYRPQLN 13
G PQ N
Sbjct: 857 GCNPQFN 863
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/82 (26%), Positives = 30/82 (36%)
Frame = -2
Query: 255 TQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQ 76
TQ++F +P + +S Q N A + P Q Y P N + Y PP Q
Sbjct: 269 TQHQF-VPHEASAISTTSQNSNGDGQNDQAIYYYQAPTQQPMNYIPYNLPNMAYPPPNFQ 327
Query: 75 NQFGYKPNLNQPQFGYRPQLNQ 10
Q +N Q Q Q
Sbjct: 328 PQGQLHHQMNAGQLHQIQQQQQ 349
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/82 (26%), Positives = 30/82 (36%)
Frame = -2
Query: 255 TQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQ 76
TQ++F +P + +S Q N A + P Q Y P N + Y PP Q
Sbjct: 329 TQHQF-VPHEASAISTTSQNSNGDGQNDQAIYYYQAPTQQPMNYIPYNLPNMAYPPPNFQ 387
Query: 75 NQFGYKPNLNQPQFGYRPQLNQ 10
Q +N Q Q Q
Sbjct: 388 PQGQLHHQMNAGQLHQIQQQQQ 409
>Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 623
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/82 (26%), Positives = 30/82 (36%)
Frame = -2
Query: 255 TQYKFGIPQNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQ 76
TQ++F +P + +S Q N A + P Q Y P N + Y PP Q
Sbjct: 332 TQHQF-VPHEASAISTTSQNSNGDGQNDQAIYYYQAPTQQPMNYIPYNLPNMAYPPPNFQ 390
Query: 75 NQFGYKPNLNQPQFGYRPQLNQ 10
Q +N Q Q Q
Sbjct: 391 PQGQLHHQMNAGQLHQIQQQQQ 412
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 147 PQTQQFGYRPQNQTH----FGYRPPL-NQNQFGYKPNLNQPQF 34
PQ QQ GY+PQ +H G P + QN +G +P QPQF
Sbjct: 6 PQQQQPGYQPQQPSHPIVGAGAAPTMAPQNPYGQQP--FQPQF 46
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = -2
Query: 198 QQNKFKFGIP-ASKQIKLPQTQQFGYRPQNQTHFGY--RPPLNQNQF--GYKPN----LN 46
Q N F+F P A +PQ Q PQ+Q FG+ PP Q Q GY N
Sbjct: 369 QPNLFQFPAPPAPPPFGVPQAPQLAPLPQHQHQFGFFQPPPQPQPQIFGGYGLNNGGGYQ 428
Query: 45 QPQFG 31
QP +G
Sbjct: 429 QPSYG 433
>AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7b protein.
Length = 404
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -3
Query: 431 EKALSIVLEEVNFMFQYSSRNKMLKQQNTQCTAPRPQPFNNFQFSDKNVIKPHFISNTQL 252
E AL + EV F ++Y + L Q + + TA +PQ + D+ + H+ S Q
Sbjct: 185 EHALEVHEGEVLFQYEYQQKMMHLAQFSDKKTAQKPQ-----ELMDEQFYQQHYQSYQQS 239
Query: 251 SINLVFHRMSQPCQINLNSKIN 186
+I+ + P +I NS N
Sbjct: 240 TISTA-NSTEIPSKIGQNSAKN 260
>AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7a protein.
Length = 480
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -3
Query: 431 EKALSIVLEEVNFMFQYSSRNKMLKQQNTQCTAPRPQPFNNFQFSDKNVIKPHFISNTQL 252
E AL + EV F ++Y + L Q + + TA +PQ + D+ + H+ S Q
Sbjct: 261 EHALEVHEGEVLFQYEYQQKMMHLAQFSDKKTAQKPQ-----ELMDEQFYQQHYQSYQQS 315
Query: 251 SINLVFHRMSQPCQINLNSKIN 186
+I+ + P +I NS N
Sbjct: 316 TISTA-NSTEIPSKIGQNSAKN 336
>Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical
protein F16D3.2 protein.
Length = 689
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 213 SNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGY-RPPLNQNQFGYKPNLNQPQ 37
SN P GIP + Q G+R H G+ RPP + ++PNLN Q
Sbjct: 104 SNLPSFNRARSGGIPRN------HNQTHGFRQSAPAHRGHHRPPAGNHGSSFRPNLNISQ 157
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = -2
Query: 222 ATMSNQPQQQNKF----KFGIPASKQIKLPQTQQFGYRP--QNQTHFGYRPPLNQNQFGY 61
+++S+ P QQ F +FG P P ++ GY P Q Q FG PP Q G+
Sbjct: 275 SSISSTPVQQQGFAPPQQFGGPPPSG---PPSEYGGYAPPQQQQQQFGAPPPQGAPQQGF 331
Query: 60 KPNLNQPQFGYRPQ 19
P G PQ
Sbjct: 332 GAPPQGPPQGGPPQ 345
>AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine
receptor, class h protein10 protein.
Length = 356
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 367 LLRELYWNIKLTSSNTILSAFSNESHPFNLTIRR 468
+L LY+ KL SSNT+ S + +S F +RR
Sbjct: 116 ILELLYFRFKLISSNTVTSIWIAKSSVFVKNVRR 149
>U39994-2|AAB37017.1| 378|Caenorhabditis elegans Hypothetical
protein C48C5.1 protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 90 VDIQNEFDFEVDIRIVAFVVILFVC*REFQ----I*IYFAVEVDLTWL 221
+DI E ++ + A V F+C FQ + YF EV LTW+
Sbjct: 271 LDITEELQMRINAILCAIVSAFFICYLPFQLQRLLFFYFDNEVILTWV 318
>AF125463-1|AAD12861.2| 263|Caenorhabditis elegans Hypothetical
protein Y49F6C.6 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 428 KALSIVLEEVNFMFQYSSRNKMLKQQNTQCTAPRPQPFNNFQFSDKNVIKPHFIS 264
K +S+ + F YS+ +L+ + T PRP P N + K F+S
Sbjct: 63 KPISLQKTKTQFFLNYSNPTVLLQYLYSTTTVPRPYPTTNPKLISLQQPKTPFLS 117
>Z83107-8|CAB05504.1| 348|Caenorhabditis elegans Hypothetical
protein F32A7.7 protein.
Length = 348
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -3
Query: 482 LPEDLLRIVRLKGCDSLEKALSIVLEEVNFMFQYSSRNKMLKQQN 348
LP+ LL ++ + C+ ++S+ + + + SRNKML+ +
Sbjct: 81 LPKPLLELLAVIFCNMFGMSISLFATQFIYRYLVLSRNKMLRHHD 125
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -2
Query: 198 QQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNLNQP 40
QQ P +Q+++ Q QQ N + +P +Q PN+N P
Sbjct: 678 QQGPSSMNTPPQQQMRMQQIQQNNQNMNNGSPHQQQPLQHQQMQQNAPNMNMP 730
>AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical
protein Y73F8A.21 protein.
Length = 703
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 99 GYRPPLNQNQFGYKPNLNQPQFGYRPQLNQ 10
GY PPLN GY PN+N P +PQ Q
Sbjct: 594 GY-PPLNA---GYTPNVNYPNLYQQPQYFQ 619
>AF104859-1|AAC79091.1| 93|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 93
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 237 IPQNVATMSNQPQQQNKFKFGIPASKQIKLP--QTQQFGYRPQNQTHFGYRPPLNQNQFG 64
+P + +QPQQQ + P +Q + P Q+Q G+ PQ H + Q
Sbjct: 2 LPTQQSAQQHQPQQQQQQAPQQPVQQQQQTPPAQSQPTGH-PQQHPHMMF-----TQQLP 55
Query: 63 YKPNLNQPQFGYRP 22
Y P +N Y P
Sbjct: 56 YAPYMNNYMNMYNP 69
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 237 IPQNVATMSNQPQQQNKFKFGIPASKQIKLP--QTQQFGYRPQNQTHFGYRPPLNQNQFG 64
+P + +QPQQQ + P +Q + P Q+Q G+ PQ H + Q
Sbjct: 473 LPTQQSAQQHQPQQQQQQAPQQPVQQQQQTPPAQSQPTGH-PQQHPHMMF-----TQQLP 526
Query: 63 YKPNLNQPQFGYRP 22
Y P +N Y P
Sbjct: 527 YAPYMNNYMNMYNP 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,274
Number of Sequences: 27780
Number of extensions: 281901
Number of successful extensions: 825
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -