Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060731.seq
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.029
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.82 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.82 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -2

Query: 219  TMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRPPLNQNQFGYKPNL-NQ 43
            T   QPQQQ + +      +Q + PQ QQ   + Q Q     +P   Q ++G    L  Q
Sbjct: 1500 TQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQ 1559

Query: 42   PQFGYRPQLNQ 10
             Q GY    N+
Sbjct: 1560 LQRGYNSGNNR 1570



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 231 QNVATMSNQP-----QQQNKFKFGIPASKQIKLPQTQQFGYRPQNQTHFGYRP 88
           Q+ AT ++QP     + +N     I   +Q K+P     G  P++  + GYRP
Sbjct: 503 QDSATPADQPLDLSAKPKNSQDNNISLLEQQKIPLRMTAGIDPKSIFNSGYRP 555



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = -2

Query: 231  QNVATMSNQPQQQNKFKFGIPASKQIKLPQTQQFGYRPQN----QTHFGYRPPLNQNQFG 64
            Q     S QPQQQ          +Q + PQ QQ  Y   +    Q   GY      N+ G
Sbjct: 1515 QQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNS--GNNRSG 1572

Query: 63   YKPNLNQPQ 37
             + N  Q Q
Sbjct: 1573 EQANSQQQQ 1581


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 452 LKGCDSLEKALSIVLEEVNFMFQYSSRNKMLKQQN 348
           L  C+ L  ALS+ L E      + +R    K+QN
Sbjct: 33  LSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN 67


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 461 IVRLKGCDSLEKALSIVLEEVNFMFQY-SSRNKMLKQQNTQCTAPRPQPFNNFQFSDKNV 285
           IVR     +LEK+L+++ E   F + + S   +    Q+ +    +  PF+  Q+ DK  
Sbjct: 19  IVRENSPRNLEKSLNVIHEWKYFDYDFGSEERRQAAIQSGEYDHTKNYPFDVDQWRDKTF 78

Query: 284 I 282
           +
Sbjct: 79  V 79


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
 Frame = -3

Query: 506 SMNVFLYNLPEDLLRIVRLKGCDSLEK-----ALSIVLEEVNFMFQY------SSRNKML 360
           S NV  YN P D +R   +   D +E+      + I  ++V            S+ N  L
Sbjct: 23  SWNVIEYNFPNDNIRNTLISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFL 82

Query: 359 KQQNTQCTAPRPQPFNNFQFSDKNVI 282
           K  N +  +P+  P+ N++ +D N I
Sbjct: 83  K--NDESESPKLNPYPNWEMNDINKI 106


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIGT 391
           YF+ LTF+ ++Y GT
Sbjct: 474 YFMFLTFFFIHYKGT 488



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIG 388
           Y  +L F CVNY+G
Sbjct: 375 YASLLEFVCVNYVG 388


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIGT 391
           YF+ LTF+ ++Y GT
Sbjct: 460 YFMFLTFFFIHYKGT 474



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIG 388
           Y  +L F CVNY+G
Sbjct: 344 YASLLEFVCVNYVG 357


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIGT 391
           YF+ LTF+ ++Y GT
Sbjct: 494 YFMFLTFFFIHYKGT 508



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIG 388
           Y  +L F CVNY+G
Sbjct: 395 YASLLEFVCVNYVG 408


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIGT 391
           YF+ LTF+ ++Y GT
Sbjct: 443 YFMFLTFFFIHYKGT 457



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 347 YFVVLTFYCVNYIG 388
           Y  +L F CVNY+G
Sbjct: 344 YASLLEFVCVNYVG 357


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 204 VDLTWLRHSVEYQIY 248
           VD  W ++++ YQIY
Sbjct: 22  VDANWYKNALVYQIY 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,173
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)