Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    95   6e-21
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    95   8e-21
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    27   2.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.3  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   4.4  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 51/123 (41%), Positives = 72/123 (58%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKM 460
           RG LK+N +H+ ++++      +K   W GS+K  A +R+V S + NMI GVT+GF+YKM
Sbjct: 32  RGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKM 90

Query: 461 RAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLLG 640
           R VYAHFPIN   TE   ++      G   +   +  PGVTV  S   K E+I+EG  L 
Sbjct: 91  RLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLE 150

Query: 641 RMS 649
            +S
Sbjct: 151 NVS 153


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 95.1 bits (226), Expect = 8e-21
 Identities = 52/123 (42%), Positives = 71/123 (57%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKM 460
           RGVLK+N + + ++++      +K   W GS+K  A +RT  S + NMI GVT+GF+YKM
Sbjct: 32  RGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKM 90

Query: 461 RAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLLG 640
           R VYAHFPIN   TE   ++      G   +   +  PGVTV  S   K E+IIEG  L 
Sbjct: 91  RLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLE 150

Query: 641 RMS 649
            +S
Sbjct: 151 NVS 153


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 275 NKSIVFIPYGNATSNFTREASNL-FITLLNEISSNSTEPVD 156
           NK+ +  PY NA  NFT   S L +I L++    N ++ ++
Sbjct: 483 NKTTLNTPYANAVGNFTGLFSGLIYIVLISYFFPNKSDDLN 523


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 136 SASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGINTMLLLHSRSS 291
           S  LAN +        +SFN+V++  E SL+      P  +N  L  H + +
Sbjct: 127 SLDLANIALDYAYGKVLSFNEVVSPLETSLMIIAALVPQDVNPQLRGHLKGA 178


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 302  FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 439
            F H +VD+ +    L + E WF        + T+CS + N++  VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 154 YSQEKLIVQPKIQPGERNYEALFSMNTII 68
           Y Q  +  +P + P   NY   FS+ T+I
Sbjct: 386 YKQSLINQKPSLNPSITNYRRFFSVGTVI 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,927
Number of Sequences: 5004
Number of extensions: 54726
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)