Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    109   2e-24
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   108   5e-24
07_01_0236 - 1725061-1727070                                           31   1.1  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  109 bits (263), Expect = 2e-24
 Identities = 53/117 (45%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 457
           RG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  SHV+N+I GVTKG++YK
Sbjct: 31  RGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYK 90

Query: 458 MRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEG 628
           MR VYAHFPIN   T     +      G           GVT++ S K K EL+++G
Sbjct: 91  MRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDG 147


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  108 bits (259), Expect = 5e-24
 Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQ 451
           RG L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT  SHV+N+I GVTKG++
Sbjct: 22  RGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYR 81

Query: 452 YKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEG 628
           YKMR VYAHFPIN   T     +      G           GVT++ S K K EL+++G
Sbjct: 82  YKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDG 140


>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 239 TSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 120
           T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 116 TKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,989
Number of Sequences: 37544
Number of extensions: 334501
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)