Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p pro...   170   2e-42
AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB...   170   2e-42
AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA...   170   2e-42
X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal prot...   169   2e-42
BT023269-1|AAY55685.1|  257|Drosophila melanogaster IP02648p pro...    52   7e-07
AF025408-1|AAC02944.1|  257|Drosophila melanogaster Windbeutel p...    52   7e-07
AE013599-2842|AAF57590.1|  257|Drosophila melanogaster CG7225-PA...    52   7e-07
AY061220-1|AAL28768.1|  512|Drosophila melanogaster LD16414p pro...    31   1.9  
AE014296-840|AAO41216.1|  512|Drosophila melanogaster CG7447-PB,...    31   1.9  
AE014296-839|AAF47894.2|  512|Drosophila melanogaster CG7447-PA,...    31   1.9  
AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p pro...    29   4.5  
AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-P...    29   4.5  
AE014134-1561|AAF52709.1|  942|Drosophila melanogaster CG9465-PA...    29   5.9  

>BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p
           protein.
          Length = 190

 Score =  170 bits (413), Expect = 2e-42
 Identities = 87/136 (63%), Positives = 99/136 (72%)
 Frame = +2

Query: 278 TRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 457
           TRG LKR+FKHLA+D+ M + R LKVEKWFG+KKELAAVRTVCSH+ENMIKGVT GFQYK
Sbjct: 30  TRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYK 89

Query: 458 MRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLL 637
           MRAVYAHFPINCVT+E   ++      G         APGVTVVNS  QK ELI+EG  +
Sbjct: 90  MRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDI 149

Query: 638 GRMSXXXXXXIQQSTT 685
             +S      IQQSTT
Sbjct: 150 ESVS-GSAALIQQSTT 164


>AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB,
           isoform B protein.
          Length = 190

 Score =  170 bits (413), Expect = 2e-42
 Identities = 87/136 (63%), Positives = 99/136 (72%)
 Frame = +2

Query: 278 TRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 457
           TRG LKR+FKHLA+D+ M + R LKVEKWFG+KKELAAVRTVCSH+ENMIKGVT GFQYK
Sbjct: 30  TRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYK 89

Query: 458 MRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLL 637
           MRAVYAHFPINCVT+E   ++      G         APGVTVVNS  QK ELI+EG  +
Sbjct: 90  MRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDI 149

Query: 638 GRMSXXXXXXIQQSTT 685
             +S      IQQSTT
Sbjct: 150 ESVS-GSAALIQQSTT 164


>AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA,
           isoform A protein.
          Length = 190

 Score =  170 bits (413), Expect = 2e-42
 Identities = 87/136 (63%), Positives = 99/136 (72%)
 Frame = +2

Query: 278 TRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 457
           TRG LKR+FKHLA+D+ M + R LKVEKWFG+KKELAAVRTVCSH+ENMIKGVT GFQYK
Sbjct: 30  TRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYK 89

Query: 458 MRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLL 637
           MRAVYAHFPINCVT+E   ++      G         APGVTVVNS  QK ELI+EG  +
Sbjct: 90  MRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDI 149

Query: 638 GRMSXXXXXXIQQSTT 685
             +S      IQQSTT
Sbjct: 150 ESVS-GSAALIQQSTT 164


>X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal protein
           L9 protein.
          Length = 190

 Score =  169 bits (412), Expect = 2e-42
 Identities = 87/136 (63%), Positives = 98/136 (72%)
 Frame = +2

Query: 278 TRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYK 457
           TRG LKR FKHLA+D+ M + R LKVEKWFG+KKELAAVRTVCSH+ENMIKGVT GFQYK
Sbjct: 30  TRGTLKRTFKHLALDMYMPDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYK 89

Query: 458 MRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLL 637
           MRAVYAHFPINCVT+E   ++      G         APGVTVVNS  QK ELI+EG  +
Sbjct: 90  MRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDI 149

Query: 638 GRMSXXXXXXIQQSTT 685
             +S      IQQSTT
Sbjct: 150 ESVS-GSAALIQQSTT 164


>BT023269-1|AAY55685.1|  257|Drosophila melanogaster IP02648p
           protein.
          Length = 257

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 109 LPVVFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYG 255
           L +V +  +  + A T TG V+LDE+SF K + +F  S+VKFD+A+PYG
Sbjct: 8   LLLVAIHSIPTTWAVTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYG 56


>AF025408-1|AAC02944.1|  257|Drosophila melanogaster Windbeutel
           protein.
          Length = 257

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 109 LPVVFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYG 255
           L +V +  +  + A T TG V+LDE+SF K + +F  S+VKFD+A+PYG
Sbjct: 8   LLLVAIHSIPTTWAVTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYG 56


>AE013599-2842|AAF57590.1|  257|Drosophila melanogaster CG7225-PA
           protein.
          Length = 257

 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 109 LPVVFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYG 255
           L +V +  +  + A T TG V+LDE+SF K + +F  S+VKFD+A+PYG
Sbjct: 8   LLLVAIHSIPTTWAVTCTGCVDLDELSFEKTVERFPYSVVKFDIAYPYG 56


>AY061220-1|AAL28768.1|  512|Drosophila melanogaster LD16414p
           protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 374 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNT 550
           ++ L ++    S VE ++ GVT     ++R V  H P N V T  +   R  T W  NT
Sbjct: 64  QRRLQSLNQAKSDVE-LLPGVTMHEVTRLRRVQPHNPYNKVQTRRLHQSRNPTEWDYNT 121


>AE014296-840|AAO41216.1|  512|Drosophila melanogaster CG7447-PB,
           isoform B protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 374 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNT 550
           ++ L ++    S VE ++ GVT     ++R V  H P N V T  +   R  T W  NT
Sbjct: 64  QRRLQSLNQAKSDVE-LLPGVTMHEVTRLRRVQPHNPYNKVQTRRLHQSRNPTEWDYNT 121


>AE014296-839|AAF47894.2|  512|Drosophila melanogaster CG7447-PA,
           isoform A protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 374 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNT 550
           ++ L ++    S VE ++ GVT     ++R V  H P N V T  +   R  T W  NT
Sbjct: 64  QRRLQSLNQAKSDVE-LLPGVTMHEVTRLRRVQPHNPYNKVQTRRLHQSRNPTEWDYNT 121


>AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 450 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 307
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-PA
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 450 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 307
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>AE014134-1561|AAF52709.1|  942|Drosophila melanogaster CG9465-PA
           protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 230 FTRE-ASNLFITLLNEISSNSTEPVDVFAREADSTAKNTTGRTKLRSIV 87
           FT++ A N+ +TL N ++ +ST+ V +  +E +    +  GRT    +V
Sbjct: 437 FTKDGADNVLVTLYNPLAHSSTQYVRIPVKEENYQVTDEKGRTVPSEVV 485


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,845,103
Number of Sequences: 53049
Number of extensions: 585579
Number of successful extensions: 1269
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)