Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   119   2e-27
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    33   0.25 
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical...    28   7.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  119 bits (287), Expect = 2e-27
 Identities = 59/134 (44%), Positives = 83/134 (61%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKM 460
           RG ++++F+HL +++  +    L+V KWFG +KELAA+RTVCSH++NMIKGVT GF+YKM
Sbjct: 31  RGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKM 90

Query: 461 RAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIEGQLLG 640
           R+VYAHFPIN    +G + +      G           GV    S  QK E+++EG  + 
Sbjct: 91  RSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQ 150

Query: 641 RMSXXXXXXIQQST 682
            +S      IQQST
Sbjct: 151 FVS-QAAARIQQST 163


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
 Frame = +2

Query: 278 TRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--K 442
           TRG  + + KH   D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  K
Sbjct: 354 TRGKKRIHVKH---DVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEK 410

Query: 443 GFQYKMRAVYAHF 481
           GF + M+A + +F
Sbjct: 411 GFYWNMKAEFLNF 423


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 441 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 304
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical
           protein Y87G2A.16 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 276 QQKHRVYPIWKCNVEFY*RSFKFVYYFIERNF 181
           + +H     W+CN+  Y  +F F+ Y    NF
Sbjct: 248 EDRHFFPQSWRCNLHQYFSNFTFILYSSSHNF 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,684
Number of Sequences: 27780
Number of extensions: 309347
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)