Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.89 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 400 CPHGGKLLFGSEPFLN 353
           CP    +LF S PFLN
Sbjct: 383 CPESDSILFVSSPFLN 398


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
 Frame = +1

Query: 103 FVLPVVFLAVL---------SASLANTSTGSV--ELDEISFNKVINK-FEASLVKFDVAF 246
           F++P+VF+AVL         S SLA    G V  E  ++   K I +   A ++ F + +
Sbjct: 214 FLIPMVFIAVLYIRIGLRIQSDSLAENVEGYVHGETKQVQSRKTITRMLSAVVITFFICW 273

Query: 247 -PYGINTMLLLHSRSSQKEL 303
            P+ +  +L ++  S+  ++
Sbjct: 274 APFHVQRLLYVYEDSTYDDI 293


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 215 SNLFITLLNEISSNSTEPVDVFAREADST 129
           S+LF+T+  ++     +  D FA  AD T
Sbjct: 176 SSLFVTIAVDVRDTEDKCKDTFAYIADVT 204


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 422 MIKGVTKGFQYKMRAVYAH 478
           M++G+  G QY     Y H
Sbjct: 740 MLRGIASGMQYLAEMNYVH 758


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 395 RTVCSHVENMIKGV 436
           R VC  +EN I+G+
Sbjct: 477 RAVCGRIENTIQGL 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,223
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)