Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060730.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   101   3e-22
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   101   3e-22
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   101   3e-22
At2g15020.1 68415.m01710 expressed protein  and genefinder             28   5.0  
At3g60670.1 68416.m06788 zinc-binding protein, putative similar ...    27   8.8  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  101 bits (243), Expect = 3e-22
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKG 445
           RG L R+FKHL +D +++       R LK++ WFGS+K  A++RT  SHV+N+I GVT+G
Sbjct: 31  RGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQG 90

Query: 446 FQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIE 625
           F Y+MR VYAHFPIN       + +      G           GV +V S K K E+I+E
Sbjct: 91  FLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILE 150

Query: 626 G 628
           G
Sbjct: 151 G 151


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  101 bits (243), Expect = 3e-22
 Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKG 445
           RG L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I GVT+G
Sbjct: 31  RGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRG 90

Query: 446 FQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIE 625
           F+YKMR VYAHFPIN       + +      G           GVT+V S K K E++++
Sbjct: 91  FRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLD 150

Query: 626 G 628
           G
Sbjct: 151 G 151


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  101 bits (243), Expect = 3e-22
 Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
 Frame = +2

Query: 281 RGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKG 445
           RG L R+FKHL +D +++       + LK++ WFG++K  A++RT  SHV+N+I GVT+G
Sbjct: 31  RGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRG 90

Query: 446 FQYKMRAVYAHFPINCVTTEGIQLLRYVTSWGRNTSEG*RWAPGVTVVNSPKQKXELIIE 625
           F+YKMR VYAHFPIN       + +      G           GVT+V S K K E++++
Sbjct: 91  FRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLD 150

Query: 626 G 628
           G
Sbjct: 151 G 151


>At2g15020.1 68415.m01710 expressed protein  and genefinder
          Length = 526

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 394 HGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSASATKASCLSHMEMQ 239
           HG  +L G  P L++  T      V++++ K PF     A     LSH + +
Sbjct: 240 HGLWILKGYFPILSMNVTNNSSNEVHNKIVKFPFVEPKEAVLRYALSHQQAE 291


>At3g60670.1 68416.m06788 zinc-binding protein, putative similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 245

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 394 EDSLFT-CREH-D*RSN*RLPIQDACCVCSLPH*LCHH*GYSIIEIRNFLGEKYIR 555
           +D  F  C +H D + N +  +   CC+   PH L  H  + +++IR ++    +R
Sbjct: 15  KDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYRDVLR 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,625
Number of Sequences: 28952
Number of extensions: 276851
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)