Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    29   0.81 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.1  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   5.7  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   7.6  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   7.6  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 428 HRTLSPTSGWFSNNFKKSILMLKY 357
           HRTLS T GWF N F  S   L Y
Sbjct: 239 HRTLSSTKGWF-NGFAGSSATLTY 261


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 412 GDRVLCAPIETLPICDKDIVMAQQHIIESEEF 507
           G   LC  + T+  C K+I++  +H+  S++F
Sbjct: 497 GTGTLCETLLTVEACTKNIILPNKHVDASQKF 528


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 524 FRNCILNSSDSIMCCWAITISLSHMGRVSM 435
           FR C+ + +DS+ C  A+T  L   G + M
Sbjct: 209 FRYCLDSHADSVTCIDALTGDLPPTGEIGM 238


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 528 LISKLYFKF-LRFYNVLLGHHYIFIAY 451
           ++  LYF F   + NV+LG  Y+F +Y
Sbjct: 504 ILVDLYFDFKAEWDNVMLGFRYVFASY 530


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 313 LDDCFNVLSEKDNLGYFSIKIDFLKLFENHPDV 411
           L++CF++L  +D+   F       KL  +HP++
Sbjct: 66  LENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNL 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,477
Number of Sequences: 5004
Number of extensions: 60326
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)