Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336...    33   0.28 
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610...    31   0.64 
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    30   1.5  
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116...    29   3.4  
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083...    28   7.8  

>03_03_0134 +
           14732622-14732830,14733202-14733316,14733429-14733632,
           14733862-14733990,14734077-14734244,14734920-14735177,
           14736051-14736096,14736574-14736601,14737206-14737295,
           14738132-14738204,14738291-14738319,14738425-14738548,
           14738741-14738851,14739082-14739182,14739263-14739365
          Length = 595

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -1

Query: 524 FRNCILNSSDSIMCCWAITISLSHMGRVSMGAHRTLSPTSGWFSNNFKKSILMLKYPRLS 345
           F+NC++N  +   CC    ++L ++ R+          T  W  +  ++ IL L  P++S
Sbjct: 520 FKNCMINGMEEEACC-KFGLTLYNLDRLYRAVESHAEETGEW--SRLREDILDLAKPKMS 576

Query: 344 FSD 336
            +D
Sbjct: 577 MTD 579


>06_01_0809 -
           6100025-6100251,6100456-6100565,6100919-6100986,
           6101108-6101229,6101446-6101527,6101629-6101695,
           6102811-6102883,6103032-6103148,6104167-6104259,
           6104430-6104495,6105121-6105218,6105917-6106016,
           6106486-6106660,6106828-6106894,6107574-6107712,
           6107830-6107926,6107992-6108130,6108212-6108363
          Length = 663

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 295 YILKFHLDDCFNVLSE-KDNLGYFSIKIDFLKLFENHPDVGDRVLCAPIETLPICD 459
           ++ +FH DD   +L    D   +F + IDF +L E  P+V  ++   P + L + D
Sbjct: 23  FLNRFHADDLRRILLPFPDGKLHFPLVIDFAELLEFDPEVAHQLYDYPKDVLELFD 78


>04_04_1035 +
           30283456-30283536,30284823-30285359,30285508-30286512,
           30286718-30287042,30287563-30287818,30287901-30288117,
           30288743-30289095,30289330-30289833,30291267-30292467,
           30292614-30292970,30293258-30293495,30294083-30295125,
           30295234-30296649,30296731-30296855,30297036-30297314,
           30297352-30297382,30298957-30299022,30299447-30299689,
           30299848-30299898,30299980-30300071,30300182-30300249,
           30300515-30300600,30300720-30300824,30300994-30301127,
           30302403-30302436,30302620-30302892,30303019-30303288,
           30303384-30303974,30304065-30304214
          Length = 3376

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -1

Query: 521 RNCILNSSDSIMCCWAITISLSHMGRVS--MGAHRTLSPTSGW---FSNNFKKSILMLKY 357
           R CI+++++    C  +    + +  +   + A   +   + W   FS+ FKKS   LKY
Sbjct: 764 RKCIIDATNDAAICKLVLKVKNELDELDDLLNADSAVFSNTRWKVVFSDEFKKSFAKLKY 823

Query: 356 PRL 348
           P+L
Sbjct: 824 PQL 826


>02_01_0169 -
           1166683-1166790,1166981-1167043,1167376-1167447,
           1167734-1167811,1168420-1168548,1169373-1169483,
           1169587-1169655,1169733-1169870,1170322-1170460,
           1170797-1170852,1171677-1171732,1172034-1172078,
           1172225-1172303,1172770-1172864,1173074-1173449
          Length = 537

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 512 ILNSSDSIMCCWAITISLSHMGRVSMGAHRTLSPTSGWFSNNF 384
           I N   S+  CW I + L   GR      R LSPT   ++ NF
Sbjct: 483 IRNKFGSLPGCWWILV-LFQWGRFGSALQRLLSPTGMLYNENF 524


>01_06_1580 -
           38406740-38407257,38407481-38407552,38408309-38408365,
           38408476-38408532,38408643-38408699,38408809-38408865,
           38409371-38409424,38409744-38409800,38410023-38410076,
           38412208-38412220,38413530-38413580,38414134-38414193,
           38414640-38414761,38415033-38415894,38416468-38416667,
           38417159-38417238,38417525-38417619
          Length = 821

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 518 NCILNSSDSIMCCWAITISLSHMGRVSMGAHRTLSPTSGWFSNNFKKSILMLKYPRLSFS 339
           +C  NS    +CC + ++    +G+V     R  S T G  +N  K ++ + K    +  
Sbjct: 65  SCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSEANSD 124

Query: 338 DNTLK 324
             T++
Sbjct: 125 GETVE 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,358
Number of Sequences: 37544
Number of extensions: 318724
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)