Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   30   1.5  
SB_36668| Best HMM Match : Phage_AlpA (HMM E-Value=7.3)                30   2.0  
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
 Frame = +1

Query: 268 LAEYTMILEYILKFHLDDCFNVLSEKDNLGYFSIKIDFLKLFENHPDVGDRVLCAPIETL 447
           +A++ + LE   ++H+ D   +L ++D   ++S+ ++ L+LF++       +L  P + L
Sbjct: 644 IAKFQLFLE---EYHVIDIRRILLQEDTAQHYSLIVNTLELFDSDIQSAQSLLTQPNKML 700

Query: 448 PICDKDIVMAQQHIIESEEFKIQFRN*NMFS*RRMFMPDFMVYL----VCPELHRTVFPK 615
           P+ D  +  A   +++  E        NM      F P+  V L    +CPEL R+  PK
Sbjct: 701 PLFDSALTQAAVSLMQETETPT-----NM-----SFKPNIHVRLSNLPICPELKRSTIPK 750

Query: 616 NVDLGMF 636
           + D+G F
Sbjct: 751 SSDMGRF 757


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 415 DRVLCAPIETLPICDKDIVM 474
           DRV C P++ +PICD+ + +
Sbjct: 316 DRVYCKPLDAVPICDQHVAL 335


>SB_36668| Best HMM Match : Phage_AlpA (HMM E-Value=7.3)
          Length = 227

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 574 YLVCPELHRTVFPKNVDLGMFFXSNRYSCPS 666
           YLV   LH+ VFP  VD+G++  S++   P+
Sbjct: 39  YLVPSPLHQPVFPALVDMGLWISSSQSLTPT 69


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +1

Query: 250 KMINGKLAEYTM--ILEYI----LKFHLDDCFNVLSEKDNLGYFSIKIDFLKLFENHPDV 411
           K  + + AEY +  ++E I    LK  + +   ++SEK NLGY S+K+  +   + +P V
Sbjct: 673 KTFSSRSAEYAIPGLVEKIGDIKLKDAVKETLMIISEKLNLGYVSLKVSQIAGGQKNPKV 732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,269
Number of Sequences: 59808
Number of extensions: 394822
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)