Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031658-1|AAH31658.1|  391|Homo sapiens minichromosome maintena...    46   2e-04
BC111745-1|AAI11746.1|  653|Homo sapiens leucine rich repeat con...    34   0.53 
BC111561-1|AAI11562.1|  653|Homo sapiens leucine rich repeat con...    34   0.53 
AY358307-1|AAQ88674.1|  653|Homo sapiens NAG14 protein.                34   0.53 
AJ297858-1|CAC82651.1|  649|Homo sapiens hypothetical protein pr...    34   0.53 
AF196976-1|AAG28019.2|  653|Homo sapiens brain tumor associated ...    34   0.53 
AK172751-1|BAD18737.1|  653|Homo sapiens protein ( Homo sapiens ...    32   1.6  

>BC031658-1|AAH31658.1|  391|Homo sapiens minichromosome maintenance
           complex component 9 protein.
          Length = 391

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 295 YILKFHLDDCFNVLSEKDNLGYFSIKIDFLKLFENHPDVGDRVLCAPIETLPICDKDIVM 474
           Y+ ++H +D   +L E+D   ++ + ++ + LFE + ++G+     P E L I D  +  
Sbjct: 16  YVSEYHKNDILLILKERDEDAHYPVVVNAMTLFETNMEIGEYFNMFPSEVLTIFDSALRR 75

Query: 475 AQQHIIES--EEFKIQFRN*NMFS*RRMFMPDFMVYLVCPELHRTVFPKNVDLGMF 636
           +   I++S  +   +  +  N+ + R   +P      VCPEL R   PK  D+G F
Sbjct: 76  SALTILQSLSQPEAVSMKQ-NLHA-RISGLP------VCPELVREHIPKTKDVGHF 123


>BC111745-1|AAI11746.1|  653|Homo sapiens leucine rich repeat
           containing 4 protein.
          Length = 653

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +  +   C C ILW  W++R Y
Sbjct: 289 LRYLVELHLHHNPWNCDCDILWLAWWLREY 318


>BC111561-1|AAI11562.1|  653|Homo sapiens leucine rich repeat
           containing 4 protein.
          Length = 653

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +  +   C C ILW  W++R Y
Sbjct: 289 LRYLVELHLHHNPWNCDCDILWLAWWLREY 318


>AY358307-1|AAQ88674.1|  653|Homo sapiens NAG14 protein.
          Length = 653

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +  +   C C ILW  W++R Y
Sbjct: 289 LRYLVELHLHHNPWNCDCDILWLAWWLREY 318


>AJ297858-1|CAC82651.1|  649|Homo sapiens hypothetical protein
           protein.
          Length = 649

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +  +   C C ILW  W++R Y
Sbjct: 285 LRYLVELHLHHNPWNCDCDILWLAWWLREY 314


>AF196976-1|AAG28019.2|  653|Homo sapiens brain tumor associated
           protein LRRC4 protein.
          Length = 653

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +  +   C C ILW  W++R Y
Sbjct: 289 LRYLVELHLHHNPWNCDCDILWLAWWLREY 318


>AK172751-1|BAD18737.1|  653|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23912 fis, clone CAE04210, highly similar to
           Homo sapiens leucine rich repeat containing 4 (LRRC4).
           ).
          Length = 653

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 506 LKYSFEIRICFHKEECSCQILWFTWFVRSY 595
           L+Y  E+ +      C C ILW  W+ R Y
Sbjct: 289 LRYLVELHLHHDPWNCDCDILWLAWWFREY 318


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,812,002
Number of Sequences: 237096
Number of extensions: 1951126
Number of successful extensions: 2208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)