Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025222-1|ABF17913.1|  639|Drosophila melanogaster FI01020p pro...    29   4.4  
AY071592-1|AAL49214.1|  639|Drosophila melanogaster RE64280p pro...    29   4.4  
AE014134-1823|AAN10741.1|  551|Drosophila melanogaster CG5603-PB...    29   4.4  
AE014134-1822|AAN10740.1|  550|Drosophila melanogaster CG5603-PC...    29   4.4  
AE014134-1821|AAN10739.1|  639|Drosophila melanogaster CG5603-PE...    29   4.4  
AE014134-1820|AAN10738.1|  639|Drosophila melanogaster CG5603-PD...    29   4.4  

>BT025222-1|ABF17913.1|  639|Drosophila melanogaster FI01020p
           protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 510 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 560


>AY071592-1|AAL49214.1|  639|Drosophila melanogaster RE64280p
           protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 510 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 560


>AE014134-1823|AAN10741.1|  551|Drosophila melanogaster CG5603-PB,
           isoform B protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 422 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 472


>AE014134-1822|AAN10740.1|  550|Drosophila melanogaster CG5603-PC,
           isoform C protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 421 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 471


>AE014134-1821|AAN10739.1|  639|Drosophila melanogaster CG5603-PE,
           isoform E protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 510 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 560


>AE014134-1820|AAN10738.1|  639|Drosophila melanogaster CG5603-PD,
           isoform D protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 588 RTNQVNHKIWH--EHSSL*KHILISKLYFKFLRFYNVLLGHHYIFIAYGQG 442
           RTN V+ KI+   E   + +H+++ +LY +      +   H+  F+  G G
Sbjct: 510 RTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSHYVAFVKSGSG 560


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,627,369
Number of Sequences: 53049
Number of extensions: 579487
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)