Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060729.seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   5.0  
At2g35260.1 68415.m04325 expressed protein                             28   6.6  
At4g23010.1 68417.m03319 UDP-galactose transporter-related conta...    27   8.7  
At3g01880.1 68416.m00133 hypothetical protein                          27   8.7  

>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 313 LDDCFNVLSEKDNLGYFSIKIDFLKLFENHPDVGDRVLCAPIETLPICD 459
           L+D F V++EK ++ +FS +   L+L  N+    D + C     LPI D
Sbjct: 244 LEDPFKVINEKGDIVHFSHEEHVLRLDVNYVHDNDTMCCGGC-ILPIND 291


>At2g35260.1 68415.m04325 expressed protein
          Length = 382

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 137 TFFYGLSIWKFTIIFLIVLINRKLFAKFLFAEAHGLTDIIFESS 6
           +FF+G+S W+F +I     I  +LF  +  A    L+DI  + +
Sbjct: 194 SFFFGMSPWQFILIVAASSIGEELF--YRVAVQGALSDIFLKGT 235


>At4g23010.1 68417.m03319 UDP-galactose transporter-related contains
           weak similarity to UDP-galactose transporter related
           isozyme 1 (GI:1669562) [Mus musculus]
          Length = 345

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 522 SKLYFKFLRFYNVLLGHHYIFIAYGQGFNGSTQNSVSHIRMVFK 391
           ++L F F  ++  + G  Y+F+ Y QGF  +T++ V+ +R   K
Sbjct: 46  NRLQFSFGWYFTFIQGFVYLFLIYLQGF--TTKHIVNPMRTYVK 87


>At3g01880.1 68416.m00133 hypothetical protein
          Length = 592

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 GPTTHYRI*GI*NTVSKLEYVFIKKNVHARFYGLP 578
           GP  HYRI    N+V+K+  +F++K +      +P
Sbjct: 533 GPRVHYRIDIFLNSVAKILPIFLRKGLRKLINKIP 567


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,040
Number of Sequences: 28952
Number of extensions: 288380
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)