Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   7.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 284 LKYDSGFHVLFFISIIAIRHSST----RFIFYFLFRIKVLRTFLMSNLH 418
           L +   F  LFF+S I I + S+     F+F+F   + V  +FL S  H
Sbjct: 127 LSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSH 175


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 356 FIFYFLFRIKVLRTFLMSNLHYGYTFKI 439
           F F+F F +    +FL ++LH+ + F++
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 209 PALDTEIYLLFMKLKK*NENFQNHILKYDSGFHVLFFISIIAIR 340
           P+LDT   L    L K + NF+  +++ D  F   +F  +I IR
Sbjct: 825 PSLDTSPELSKYSLAKLSNNFKRFVMR-DDPFSQAYFKRVIGIR 867


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 110 ITARRKTPASIES-PLQYNHPDCLITKR 190
           I A++ +   +ES P  Y HP  LIT+R
Sbjct: 324 IVAQKLSETLVESMPFTYKHPPVLITRR 351


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 572 IIIYKTHSKSIKCTKFFYCGGFL 640
           I  +K H+K I C +FF   G L
Sbjct: 259 IFTWKGHTKGISCLRFFPISGHL 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,455
Number of Sequences: 5004
Number of extensions: 47536
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)