Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0228 - 15861977-15862930                                         30   1.5  
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    30   2.0  
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     28   6.0  

>09_04_0228 - 15861977-15862930
          Length = 317

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 136 SRRLAACGYSGSGESGASTVATDVPP 59
           SR L+A  ++G+G  GA  V  DVPP
Sbjct: 79  SRSLSAVFFAGAGNEGAVLVCADVPP 104


>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 84  DAPDSPEPE*PHAARRRLRSNHHYNTI 164
           DAP  P P+ P+A  + LR  H YNT+
Sbjct: 328 DAPQQPPPD-PNAQEKFLRIKHAYNTL 353


>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 101 GAGITARRKTPASIESPLQYNHPDCLITKRK*RYP 205
           G G TARRK  AS  SP     P    T  + R+P
Sbjct: 102 GLGATARRKRSASARSPPPARPPPATNTSAEERFP 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,352
Number of Sequences: 37544
Number of extensions: 272685
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)