Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC098576-1|AAH98576.1|  918|Homo sapiens inner centromere protei...    31   2.9  
AY714053-1|AAU04398.1|  918|Homo sapiens inner centromere protei...    31   2.9  
AF282265-1|AAF87584.1|  919|Homo sapiens inner centromere protei...    31   2.9  

>BC098576-1|AAH98576.1|  918|Homo sapiens inner centromere protein
           antigens 135/155kDa protein.
          Length = 918

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  DSASYLKKV-RAAGGTSVATVD--APDSPEPE*PHAARRRLRSNHHYNTITPTV 176
           ++ S L++V RAA   + AT+   AP SP PE P    ++   NH    + P V
Sbjct: 116 ENGSVLRRVTRAAAAAAAATMALAAPSSPTPESPTMLTKKPEDNHTQCQLVPVV 169


>AY714053-1|AAU04398.1|  918|Homo sapiens inner centromere protein
           protein.
          Length = 918

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  DSASYLKKV-RAAGGTSVATVD--APDSPEPE*PHAARRRLRSNHHYNTITPTV 176
           ++ S L++V RAA   + AT+   AP SP PE P    ++   NH    + P V
Sbjct: 116 ENGSVLRRVTRAAAAAAAATMALAAPSSPTPESPTMLTKKPEDNHTQCQLVPVV 169


>AF282265-1|AAF87584.1|  919|Homo sapiens inner centromere protein
           INCENP protein.
          Length = 919

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  DSASYLKKV-RAAGGTSVATVD--APDSPEPE*PHAARRRLRSNHHYNTITPTV 176
           ++ S L++V RAA   + AT+   AP SP PE P    ++   NH    + P V
Sbjct: 116 ENGSVLRRVTRAAAAAAAATMALAAPSSPTPESPTMLTKKPEDNHTQCQLVPVV 169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,333,304
Number of Sequences: 237096
Number of extensions: 1538769
Number of successful extensions: 2316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2316
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)