Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm rece...    29   4.1  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    28   5.4  

>AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 156 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 284 LKYDSGFHVLFFISIIAIRHSSTRFIFYFLFRIKVLRTFLMSNLHYGYTFKIALLHCRSV 463
           L+Y SGF ++F+I +  +    T F+FY +   + +   L  NL   Y   I     +++
Sbjct: 126 LRYFSGFRLVFWILLSILCGIMTGFMFYAIGSRQEISQGLRENLETMYDLDIN----QTI 181

Query: 464 YFW*LKW 484
           Y+  L W
Sbjct: 182 YYVFLYW 188


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 269 FQNHILKYDSGFHVLFFISIIAIRHSSTRFIFYFLFRIKVLRTFLM 406
           FQN ++K    +H+     I+ I +S T  I+YF   +  +  F++
Sbjct: 34  FQNSLMKNKPEYHLFKIRFIVDICYSLTVSIYYFSLIVSYISPFIL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,064
Number of Sequences: 27780
Number of extensions: 263695
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)