Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 69  SVATVDAPDSPEPE*PHAARRRLRSNHHYNTITP 170
           S+ +V++  SP+P      R  L   H++ T+TP
Sbjct: 407 SITSVNSTSSPKP---FPRRATLAQLHNFTTMTP 437


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 424 TIMQIRHKKSSQNFYSK*KIKNKPCAAVSNGYDANKE 314
           +IMQ    K + N Y + +   + C+ +S  Y +N +
Sbjct: 632 SIMQRASMKENLNVYPEFQENVQLCSEISESYSSNNK 668


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 133 RRLAACGYSGSGESGASTV 77
           R L AC  +GSG++ A  V
Sbjct: 234 RDLMACAQTGSGKTAAFAV 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,701
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)