Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060727.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12450.1 68417.m01970 expressed protein                             28   5.0  
At4g37750.1 68417.m05344 ovule development protein aintegumenta ...    28   6.6  

>At4g12450.1 68417.m01970 expressed protein
          Length = 277

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 151 W*FDRSRRLAACGYSGSGESGAST 80
           W F   +  A C +SGSGE+ AST
Sbjct: 199 WGFPGGKGAAVCTFSGSGEAHAST 222


>At4g37750.1 68417.m05344 ovule development protein aintegumenta
           (ANT) identical to ovule development protein
           aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
          Length = 555

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 513 TGNHHHQCTPHFNYQK*TDRQCSRAIL 433
           TG+HHHQ   + N+Q    +Q S A++
Sbjct: 211 TGSHHHQQNQNQNHQSQNHQQISEALV 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,923
Number of Sequences: 28952
Number of extensions: 230120
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)