Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060726.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    30   0.36 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.5  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    26   5.9  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.9  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 400 DWLEEIKGFYYIKNYVF--SELKTMSPTHYCKRD-DLTKRMSEISLMLQFQLK*VWAYAI 570
           +WL+EI   +  KNY       K +S T   +R+ + TK+M EI          VW+Y +
Sbjct: 98  EWLDEIAEDFQ-KNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYH----VWSYRV 152

Query: 571 NILQDFMKITSEL 609
            ILQ+F   + EL
Sbjct: 153 WILQNFNDYSQEL 165


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 38  VTQRICKLFTYIRCLKCKFCSVLYNLLAVTSGW 136
           V+ RI ++F  +  +KC  CSV+++  +  S +
Sbjct: 240 VSNRIVRIFFLLSAMKCLGCSVIWHTFSSLSNY 272


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 462 NNVTNTLLQTG*FNKADVRDFFNVAISTK 548
           ++++NT LQ     ++ +RDF+N +I  K
Sbjct: 265 SHLSNTCLQGDNVEQSSIRDFWNTSIENK 293


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 332 FHNCWSVFTNXLKCLQVELKLSISWQH 252
           FHN WS  +  +  L V L L   W H
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIWFH 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,248
Number of Sequences: 5004
Number of extensions: 50777
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)