Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060726.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0636 + 22983898-22985043                                         29   2.6  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    29   3.5  
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483...    28   6.0  

>06_03_0636 + 22983898-22985043
          Length = 381

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 349 LIPDAAFVVVESDCHDGD 402
           +IPD   VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 259  QEILNFSSTCKHFNXLVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 426
            QE+ + +    + N LV+  D +L+K +L+    D + VVV  DC   DW    + F
Sbjct: 904  QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956


>07_03_1601 -
           28047764-28047845,28048043-28048078,28048209-28048339,
           28048695-28048967,28049039-28049166,28049250-28049369,
           28049461-28049538,28049598-28049669,28049790-28049849,
           28050096-28050217,28052918-28053048,28053382-28053534,
           28053628-28053755,28053831-28053968,28054056-28054144,
           28055741-28055878,28056870-28057102
          Length = 703

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +1

Query: 289 KHFNXLVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYVFSELKTM 468
           + F  L N+ Q  W E  K +  + +  VV     DGD +        IK  +F      
Sbjct: 164 EEFGSLKNSGQGAWSELSKVVASNLSESVVSLASFDGDIMHSACTGVVIKTDLFGTSYLT 223

Query: 469 SPTHYCKRDDLTKRMSEISLMLQFQLK*V---WAYAINI 576
           S +     DD +K M  +S+ +    K V   W Y  ++
Sbjct: 224 SASLIRSFDDESKIMPFVSIEVHLPKKQVAHGWLYKYDL 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,078
Number of Sequences: 37544
Number of extensions: 268505
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)