Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060726.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   4.7  
SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)                   28   8.1  

>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 59  LFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSXYSLPAEVISI 238
           L  Y+R  +  FC ++YN    T+  SS  I      ++ +HI+   L+ + L  EV+ I
Sbjct: 728 LTVYLRSNEQDFCGIVYN---TTNLCSSSLIVRQDGFVKLLHIVCIVLACFHLSKEVLQI 784

Query: 239 I 241
           +
Sbjct: 785 V 785


>SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)
          Length = 597

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 538 IATLKKSLTSALLNHP-VCNNVLVTLFSIQKXHNFLYSRNL*SLPTSH 398
           IA   K+LT     +  +    L  +F+++K H+FLY R    L T H
Sbjct: 202 IANASKTLTETQRKYSQIQKEALAIVFALRKFHHFLYGRKF-ILVTDH 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,216,354
Number of Sequences: 59808
Number of extensions: 349728
Number of successful extensions: 718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)