Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060725.seq
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 85 4e-18
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 85 8e-18
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 81 9e-17
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.30
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 0.92
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 2.8
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.7
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 4.9
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 6.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 85.4 bits (202), Expect = 4e-18
Identities = 36/60 (60%), Positives = 54/60 (90%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 84.6 bits (200), Expect = 8e-18
Identities = 35/60 (58%), Positives = 53/60 (88%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 81.0 bits (191), Expect = 9e-17
Identities = 33/60 (55%), Positives = 53/60 (88%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.30
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -3
Query: 210 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 82
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 0.92
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 225 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 91
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 240 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 97
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 140 VEKILSSVGIEADAEKLKKVITELNG 217
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.8
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 225 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 82
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.7
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 69 KKCVTWPRIYWLCWV 113
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 407 TKLYKSTRRWSLFQFMF 457
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 268 ALTTALTSGRNKLFNILAVELSDYFLKLLSVSFDTDG 158
+L+T LT R K L+ + YFL+ ++ + DG
Sbjct: 441 SLSTYLTDSRRKANRFLSYDEEHYFLQKKNLFLNADG 477
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 252 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 97
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 206 ELNGKDVEQLIAAGRESCRQC 268
E NG D QL G SC+ C
Sbjct: 180 EFNGTDCFQLTRCGHVSCQSC 200
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 246 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 82
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,704
Number of Sequences: 5004
Number of extensions: 21307
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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