Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060725.seq
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     79   2e-15
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    66   2e-11
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           65   3e-11
07_01_1001 - 8460467-8460799                                           62   2e-10
07_03_0321 + 16757414-16757743                                         62   3e-10
01_06_0098 - 26416768-26416998                                         32   0.30 
08_02_1093 - 24271826-24273427                                         30   1.2  
12_02_1217 + 27082452-27083593,27085041-27085158                       27   8.7  
07_03_1321 - 25794146-25794904                                         27   8.7  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 35/60 (58%), Positives = 51/60 (85%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/61 (45%), Positives = 45/61 (73%)
 Frame = +2

Query: 71  KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 250
           +M++++AYLLA L G   P+A D+  IL SVG E D  K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 251 E 253
           E
Sbjct: 253 E 253


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 27/60 (45%), Positives = 45/60 (75%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           M++++AYL+A L G ++P A D+  IL SVG E D  K++ ++++++GKD+ +LIA GRE
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MR+VAAYL+A +GG  +P   DV  IL +VG + D +KL  +  ++ GKD+ +++AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MR+VAAYL+A +GG  +P   DV  IL +VG + D +KL  +  ++ GKD+ +++AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 125 PAAADVEKILSSVGIEADAEKLKKVITELNGKD 223
           P    V KI+ +V IEAD+ + K ++  L GKD
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 71  KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 250
           + R  AA  +AV  G+TT AAA  +   SS G     + ++ +   L  +D    +A  R
Sbjct: 3   RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62

Query: 251 ESCR 262
              R
Sbjct: 63  RHRR 66


>12_02_1217 + 27082452-27083593,27085041-27085158
          Length = 419

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 92  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKL 190
           Y+LA+     TPA +D E+    VG +AD + L
Sbjct: 27  YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59


>07_03_1321 - 25794146-25794904
          Length = 252

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 240 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 97
           A+  ++S P ++  T L   A A +  + R  +T+AAA    PPS+ S
Sbjct: 157 AMMRASSSPATNTTTSLVLDALAML-AKSRAIATAAAAAAAAPPSSGS 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,823
Number of Sequences: 37544
Number of extensions: 153618
Number of successful extensions: 458
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)