Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060725.seq
         (506 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein prot...    89   3e-18
AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB...    89   3e-18
AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA...    89   3e-18
X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal pr...    89   4e-18
AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p pro...    89   4e-18
Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.         33   0.22 
AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-P...    33   0.22 
AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p pro...    31   0.90 
AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p pro...    29   4.8  
AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB...    29   4.8  
AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-P...    28   6.3  

>X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein
           protein.
          Length = 113

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MRYVAAYLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60


>AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB,
           isoform B protein.
          Length = 113

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MRYVAAYLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60


>AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA,
           isoform A protein.
          Length = 113

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MRYVAAYLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60


>X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal
           protein protein.
          Length = 113

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MRYVAAYLLAVLGGK +PA  D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60


>AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p
           protein.
          Length = 113

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
           MRYVAAYLLAVLGGK +PA  D+EKILSSVG+E DAE+L KVI EL GK ++ LI  GRE
Sbjct: 1   MRYVAAYLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGRE 60


>Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.
          Length = 644

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -3

Query: 252 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 97
           S P++ S S S+  S   +F S SAS S PT      T+AAAG +    T+S
Sbjct: 148 SAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSS 199


>AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-PA
           protein.
          Length = 644

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -3

Query: 252 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 97
           S P++ S S S+  S   +F S SAS S PT      T+AAAG +    T+S
Sbjct: 148 SAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSS 199


>AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p
           protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 252 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 118
           S P++ S S S+  S   +F S SAS S PT      T+AAAG +
Sbjct: 148 SAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGAL 192


>AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 95  LLAVLGGKTTPAAADVEKILSSVGIEADAEK 187
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 95  LLAVLGGKTTPAAADVEKILSSVGIEADAEK 187
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-PA
           protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 246 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLP 112
           P   S   +L   +V TF++ + S + PT + ++ T +   +V+P
Sbjct: 154 PIPTSTMATLQAQTVATFIAATGSKNRPTTIVVYPTVSPESIVIP 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,045
Number of Sequences: 53049
Number of extensions: 246817
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)