Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060725.seq
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    74   7e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    61   4e-10
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    32   0.27 
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    29   2.6  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    28   4.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   7.8  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAG 247
           MRYV+AYLLAVLGG   P   D++ ILS+VG++ADAE  K V++ L GK VE+LIA G
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEG 58


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 26/59 (44%), Positives = 39/59 (66%)
 Frame = +2

Query: 74  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 250
           M+Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGK 59


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 119 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 238
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 119 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 238
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
            F31E3.4 protein.
          Length = 1131

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +2

Query: 113  GKTTPAAADVEKILSS---VGIEADAEKLKKVITELNGKDVEQLIAAGRESC 259
            G T+ A   +E++      VG++A+  K+K  + E +GK V Q+ A GR SC
Sbjct: 890  GMTSLAVQSLEELPKEKELVGLDAEFIKIKTDLLEFDGKTV-QMRAVGRASC 940


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 258 QLSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 88
           +LS P +IS  T  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 430 RLSSPTSIS--TVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 3   ARGLF-KTNVILSALHVSCQLGLKKCVTW 86
           ARGL+ KTN  +  +++ CQ GL   + W
Sbjct: 240 ARGLYQKTNGDVGGIYLGCQFGLFAMIIW 268


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 234  SCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT*RIF*VLI 58
            S +T+ P   ++T +  S   S PT   + ST+ AA V+    T+S  + +  +F VLI
Sbjct: 2254 SVATAGPTGPILTVVPVS---SAPTSGAVSSTATAAPVITTTKTSSVLSVSFSMFIVLI 2309


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 158 SVGIEADAEKLKKVITELNGK---DVEQLI 238
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 158 SVGIEADAEKLKKVITELNGK---DVEQLI 238
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 15  FKTNVILSALHVSCQLGLKKCVTWPRIYWLC 107
           F+   +    H  CQ G  +CV  PR  W C
Sbjct: 45  FRRVFVTHKQHFKCQTGQNQCVPDPRGRWNC 75


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +2

Query: 158 SVGIEADAEKLKKVITELNGK---DVEQLI 238
           SVG  ADA+K  K I ++NGK   DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,491,327
Number of Sequences: 27780
Number of extensions: 120826
Number of successful extensions: 395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)