Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060725.seq
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 71 6e-13
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 71 6e-13
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 71 6e-13
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 67 7e-12
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 65 2e-11
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 65 2e-11
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 62 2e-10
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 60 8e-10
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 29 1.4
At1g67140.1 68414.m07638 expressed protein 29 1.8
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 27 9.6
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 9.6
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 70.5 bits (165), Expect = 6e-13
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 66.9 bits (156), Expect = 7e-12
Identities = 30/60 (50%), Positives = 44/60 (73%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 65.3 bits (152), Expect = 2e-11
Identities = 27/60 (45%), Positives = 45/60 (75%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 65.3 bits (152), Expect = 2e-11
Identities = 27/60 (45%), Positives = 45/60 (75%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 60.1 bits (139), Expect = 8e-10
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +2
Query: 74 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 253
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 143 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGRES 256
E++L G+E +K+++TE NG+ +E +L+A+G+ S
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSS 366
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -2
Query: 256 ALTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 134
+L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1404 SLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 235 KLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRSLATQHSQ*IRGHVTHFLSPN 59
+L N++A+++ +K L S +LNVSG++ Q Q R H + PN
Sbjct: 98 RLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCRFHTSTKSGPN 156
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 167 IEADAEKLKKVITELNGKDVEQL 235
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,006,813
Number of Sequences: 28952
Number of extensions: 114919
Number of successful extensions: 315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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