Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060724.seq
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 111 3e-25
10_08_0310 - 16669565-16669822,16670558-16670794 108 2e-24
01_06_1794 - 39919363-39920025 29 1.7
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.2
06_03_1007 + 26869731-26870429,26871262-26871387 29 2.9
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 2.9
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 3.9
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 3.9
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.1
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.1
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 6.8
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 8.9
08_02_0830 - 21617485-21618198 27 8.9
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 8.9
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 111 bits (267), Expect = 3e-25
Identities = 54/111 (48%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +2
Query: 20 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 199
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 200 TGRVYNVTAHALGVIVNKLFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 349
TGRV+NVT A+GV +NK + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +1
Query: 241 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 420
+ + V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEG 134
Query: 421 PKAAHIVSGTEKPVLLAPIPYEFV 492
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 108 bits (260), Expect = 2e-24
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2
Query: 20 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 199
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 200 TGRVYNVTAHALGVIVNKLFAEGLYR 277
TGRV+NVT A+GV +NK + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 241 DCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 420
+ + V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQG 134
Query: 421 PKAAHIVSGTEKPVLLAPIPYEFV 492
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 340 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 477
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 127 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 228
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 239 VIVNKLFAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 394
V+V ++ E Y S + + S S +AD + RG R+PR ARP
Sbjct: 54 VVVVEVEEEEGYESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 119 YKVGDIVDIRGNGAVQKGMPHKVY 190
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 367 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 495
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 127 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 222
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 374 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 481
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 304 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 411
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 269 LYRSASISVLSMSSTPSADKTSLRESKRM 355
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 343 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 474
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 313 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 432
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 74 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 238
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,068
Number of Sequences: 37544
Number of extensions: 295283
Number of successful extensions: 1071
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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