Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060724.seq
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      131   4e-31
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.74 
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    30   1.3  
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   1.7  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.7  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    29   3.0  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   4.0  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               28   4.0  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.3  
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)               27   6.9  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.2  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  131 bits (316), Expect = 4e-31
 Identities = 58/78 (74%), Positives = 67/78 (85%)
 Frame = +2

Query: 20  MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 199
           MTN+KGYR GTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 200 TGRVYNVTAHALGVIVNK 253
           TGRVYNVT  ALGV+VNK
Sbjct: 483 TGRVYNVTKRALGVVVNK 500


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 331 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 480
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 34  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 156
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 156
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 34  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 156
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 156
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 217 RDCSCSRCDCQQAVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 363
           RDC+CS+C      R R+   R+ I  +  K ++ R+ + +R  EN RL
Sbjct: 44  RDCTCSKCQL-ITERQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 394 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 486
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 277 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 393
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 193 WKDRSRVQRDCSCSRCDCQQAVRG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 366
           WK++  ++ +     C  Q+  +   + +P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 277 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 456
           K I +  EH + S C Q F +    N  + ++  + GKT  + +     K  HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 381 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANSLLTITPRA*AVTLYT 208
           S+ F +   I  D+LK  L +  +     TD++ +  +YN + ++LL    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 207 RPVFPWY 187
           RP  PW+
Sbjct: 287 RPRLPWF 293


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +1

Query: 277  KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 456
            +++ +        K R + ++   + +RLL+++++  K   L++ P P  A  + +  E 
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593

Query: 457  PVLLAPIPYEF 489
            P+  A  P+ F
Sbjct: 1594 PIHQAASPFVF 1604


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 252
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
          Length = 218

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 88  NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAV 258
           N  A+ + ESV+SWR     R++   +  + +  P    DRS +V       RCD Q   
Sbjct: 85  NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143

Query: 259 RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 372
             R +P+ +   V  +  S+ R+  +  V    R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 299 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 433
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 133  HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 246
            HC RH ++   +   AT+ +PW  KD S   R C  + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,553
Number of Sequences: 59808
Number of extensions: 346030
Number of successful extensions: 1063
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)