Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060723.seq
         (494 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q560K8 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_Q8YWJ7 Cluster: All1616 protein; n=2; Nostocaceae|Rep: ...    32   6.1  

>UniRef50_Q560K8 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 990

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 249 CGGXKKAPDPHSLPFVFTLLATKIHSTYAPLLRRSLSQH 133
           CG    +PD H+LP   + L T +H  +  +L  S SQH
Sbjct: 193 CGVPTSSPDAHALPSRASALLTHLHGQFLAILSTSPSQH 231


>UniRef50_Q8YWJ7 Cluster: All1616 protein; n=2; Nostocaceae|Rep:
           All1616 protein - Anabaena sp. (strain PCC 7120)
          Length = 227

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 225 DPHSLPFVFTLLATKIHSTYAPLLRRSLSQHKLKIRGYHEYLYSNNDFKQY 73
           D + LP    L++T + +TYA L +  L  +   + GYH     N   KQY
Sbjct: 6   DSYLLPAAKGLMSTSVPNTYAKLAKALLINYSFDLSGYHVDELVNRWQKQY 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,374,175
Number of Sequences: 1657284
Number of extensions: 8510744
Number of successful extensions: 20327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20316
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)