Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060723.seq
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.29 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    29   0.51 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   4.7  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   8.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   8.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 249  CGGXKKAPDPHSLPFVFTLLATKIHSTYAPLLRRSLSQHKLKIRGY--HEYLYSNNDF 82
            C   + + D HSL   F LLA + +   A + ++ L + + K R Y   E+ +  ND+
Sbjct: 2966 CSEKQHSSDTHSLANSFVLLANEFYIHNAKIKQKELEEIEEKNRLYRQREFNFDKNDY 3023


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 261 IILPCGGXKKAPDPHSLPFVFTLLATKIHSTYAPLL 154
           I+ P GG K   D  ++P + T +  +IH+T  P++
Sbjct: 376 ILKPLGGDKFGFDIGNIPGLTTFITEQIHNTLGPMM 411


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 264 RIILPCGGXKKAPDPHSLPFVFT 196
           +I+L CGG  ++ DP SL  + T
Sbjct: 409 KIVLNCGGQLRSDDPTSLQDIVT 431


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 265 VSNGNVIDTGTH 300
           +SNG +++TGTH
Sbjct: 791 ISNGRIVETGTH 802


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 185 VANKVNTNGKLWGSGAFXXPP 247
           ++ + +TN  L GSGAF  PP
Sbjct: 36  LSEQQSTNSLLHGSGAFNKPP 56


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 174 STYAPLLRRSLSQHKLKIRGYHEYLYSNN 88
           S+ A LLR  +S   L+++  H+Y+ S+N
Sbjct: 407 SSEAWLLRTEMSPLHLRLKNAHKYVLSDN 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,290
Number of Sequences: 5004
Number of extensions: 32975
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)